Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0808 ATGGTGATTAAACGTAGTGTTAAAGTTGAAATGCCGAAATTGAAAAGGTGTAAATTGGATGAGCCTCATTGTGAAGATGAAGAACATGAAGGTTGTTCCGGGAGTCAGAAGAAGCATAAGGTGGATGGGTTTAATCCTGAAGTGGATTTTGACACTGGTTCTGCTTCATGGAACAGTGAAGTTACAAATAATGGTGGTGTTGGCGAAGTTGAATTGAATTCATCGCGTAAAACGGTGAAAGTACGGTTCTCGTGTGGCGGTCCTCAGGTGCTTCCGTCAAGCTTTGAAAACGATGGTAAGGTTATGGTGAAGACCGGGAGTAATGGTTCTGGTTCCGGTCTTAGTTTTGACGGTGCAGATGAAAAGATTAATGGGAATGTGGGAAGGAGGAAAGATGTTTATAGGCTGGAGGAATTTACTTTGGGTGATATTGTTTGGGCGAAATGCGGGAAGAGGTTTCCGGCTTGGCCCGGTGTGGTGATTGATCCTCTCTCAGAGGCTCCTCAATCCGTCATCGACTGTTGTGTTCCGGATACACTTTGTGTGATGTTTTTCGGTTATTCGAAAAATGGAACAAGGGATTATGCTTGGGTGAAGCAGGGAATGGTATTCCCCTTTGCAGAATTCATGAACAGATTTCAGGGGCAGACACAATTGTTCAAGAGCAAACCGAGTGATTTTCGGAAGGCGTTGGAGGAGGCAAAGTTGGCAGAAGATGGTATTCTGGAATCACAGTTGAGAGCGGAGGAAATGACTGACGGAGAAGCATATCCTGATAAACTTCGACAGGTCTCAGCTTCAAATATTGATCAAGAATATTACTGCCAGGAAAAGGATGCCAGATGTTGTGCTAGCTGTGGTTTGATGTTGCCATGCAAAACCATGAAGAAGGTTAAGGATTCAAGTCATGCACCACAATTTCTATGCAAACATTGTGTCAAGTTACGAAAATCAAAACAATATTGTGGAATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGAATTGGGTATGTTGTGATGGTTGCAATGTATGGGTGCATGCTGAGTGTGATAAGATTTCTACAGAACATTTCAAGGATCTGGAAAATACCGACTACTATTGTCCAGATTGCAAGGAAAGAATAAATTGTAAATTACCAGAATCACCAACATACAAGTCAAAAATCAAATCAGTGGAGAGTAGCCAAAACGTTGTGGTACCTGAGAAGTACAGATCAGTGGAGAATAGCCAAAACGGTGTGGTACCTGAGAAGTTAACGGTGGTGTGCAATGGAATGGAAGGAATTTACATCCCAAAGCTTCATTTAATTATGTGCAAATGTGTTTCTTGTGATTCAAGGAAGCGGACACCTAGTGAATGGGAAAGACACACAGGAAGCAGAGCTAAAAAATGGAAATACAGTGTGAAAGTGAAAAGCACAATGCTACCGCTTGAAAAATGGATCACAGAGCACATTCCAGAAGATGGAGTTTCCCAGGAGTTGGATCAGCAGCAGGTGCTTGCCTTTTTGCAAGAGAAGTATGAGCCAGTTCATGCAAAATGGACGACAGAAAGATGTGCTATTTGTAGATGGATCGAAGACTATGAGGATAACAAAATTATCATCTGCAACAGATGCCAAATAGCAGTCCACCAGGAATGCTATGGTGCAAAGCATGTCCAGGATTTTACTTCTTGGGTATGCAGAGTATGCGAAACCCCTGATGTTGAAAGAGAGTGCTGCCTTTGTCCAGTAAAAGGTGGTGCTCTGAAGCCAACTGATGTCGAGATGTTGTGGGTTCATGTAACATGCGCTTGGTTTCAACGTGAAGTTGTTTTCAAAAACCCTGAGGTCATGGAACCTGCCCTCGGAATTCTTAGAATTCCTCCTAATTCCTTTGTGAAGACCTGTGTAATTTGTAAACAAAGCCATGGTTCTTGTACAAGTTGTTGCAAGTGTTCTACTCATTTTCATGTAATGTGCGCATCAAGAGCTGGGTATACCATGGAATTGCATTCCATGGTGAAGAATGGGACTACAATAACAAAGAAGATAATATACTGCGCAGTTCATAGAGTCCCAAGTCCAGATTCTGTACTGGTTTCACATTCATCCCTGGGGATATTTGCTCCCAGAACTTTGATTGAAAATCACAAGGGATGCTTCCGGGGATCAAGGCTGGTCTCATCAAATAATATAGAGCTCAATGAAGGTTCATCCCGTGAAAATGATAGAGTCGAGCCATTTTCTACTGCGAGATGTCGCGTGCACCTAAGGTCTTCTAATAAGAGAGCTGATGTGGCAATTATTCATTTGCTGAGGGGACCCAGTCTTCATTCTTTAGGTGAAATAACTCAATTGAACAACTATAAGGATGCTGAAGTATTTACTTCTTTCAAGGTCCGTCTTCACCATCTGCAGAAAACTGAAAATCTTAGAATTTGCTTCGGAAAATCGGGCATTCATGGATGGGGTCTCTTTGCTCGAAGAGATCTACAAGAAGGAGATATGGTTGTTGAGTATCGAGGTGAGCAGGTAAGGCGTAGTGTGGCTGATCTGAGGGAAGCAAAATATCGTTCAGAAGGCAAAGATTGCTATTTGTTCAAGATCAGCGAGGAGGTTGTCATCGATGCAACACACAAGGGCAATATAGCACGTTTAATAAACCACTCTTGCATGCCAAACTGCTATGCAAGGATTTTGAGTTTGGGTAATCAAGGGAACCGGATTGTTCTTATTGCGAAAACCAATGTTTCTGCTGGTCAAGAACTTACGTATGATTACTTGTTCGATCCAGACGAGCCAGAAGAACTGAAAGTTCCCTGCCTTTGCAGAGCTTCCAACTGTAGAAAATTTATGAACTAG 2850 0.4239 MVIKRSVKVEMPKLKRCKLDEPHCEDEEHEGCSGSQKKHKVDGFNPEVDFDTGSASWNSEVTNNGGVGEVELNSSRKTVKVRFSCGGPQVLPSSFENDGKVMVKTGSNGSGSGLSFDGADEKINGNVGRRKDVYRLEEFTLGDIVWAKCGKRFPAWPGVVIDPLSEAPQSVIDCCVPDTLCVMFFGYSKNGTRDYAWVKQGMVFPFAEFMNRFQGQTQLFKSKPSDFRKALEEAKLAEDGILESQLRAEEMTDGEAYPDKLRQVSASNIDQEYYCQEKDARCCASCGLMLPCKTMKKVKDSSHAPQFLCKHCVKLRKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISTEHFKDLENTDYYCPDCKERINCKLPESPTYKSKIKSVESSQNVVVPEKYRSVENSQNGVVPEKLTVVCNGMEGIYIPKLHLIMCKCVSCDSRKRTPSEWERHTGSRAKKWKYSVKVKSTMLPLEKWITEHIPEDGVSQELDQQQVLAFLQEKYEPVHAKWTTERCAICRWIEDYEDNKIIICNRCQIAVHQECYGAKHVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFQREVVFKNPEVMEPALGILRIPPNSFVKTCVICKQSHGSCTSCCKCSTHFHVMCASRAGYTMELHSMVKNGTTITKKIIYCAVHRVPSPDSVLVSHSSLGIFAPRTLIENHKGCFRGSRLVSSNNIELNEGSSRENDRVEPFSTARCRVHLRSSNKRADVAIIHLLRGPSLHSLGEITQLNNYKDAEVFTSFKVRLHHLQKTENLRICFGKSGIHGWGLFARRDLQEGDMVVEYRGEQVRRSVADLREAKYRSEGKDCYLFKISEEVVIDATHKGNIARLINHSCMPNCYARILSLGNQGNRIVLIAKTNVSAGQELTYDYLFDPDEPEELKVPCLCRASNCRKFMN* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0808 949 CDD SET_SETD1-like 797 945 - -
Mtr8g0808 949 SMART set_7 807 930 IPR001214 GO:0005515
Mtr8g0808 949 Gene3D SET domain 783 949 IPR046341 -
Mtr8g0808 949 Pfam PHD-zinc-finger like domain 574 686 - -
Mtr8g0808 949 PANTHER PHD FINGER PROTEINS 1 949 - -
Mtr8g0808 949 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 949 IPR025780 -
Mtr8g0808 949 Gene3D - 133 244 - -
Mtr8g0808 949 SMART PostSET_3 933 949 IPR003616 -
Mtr8g0808 949 Pfam PHD-finger 533 567 - -
Mtr8g0808 949 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 376 IPR013083 -
Mtr8g0808 949 ProSiteProfiles PWWP domain profile. 141 209 IPR000313 -
Mtr8g0808 949 SUPERFAMILY FYVE/PHD zinc finger 518 583 IPR011011 -
Mtr8g0808 949 ProSiteProfiles Post-SET domain profile. 933 949 IPR003616 -
Mtr8g0808 949 ProSiteProfiles Zinc finger PHD-type profile. 319 375 IPR019787 -
Mtr8g0808 949 Pfam SET domain 818 923 IPR001214 GO:0005515
Mtr8g0808 949 SMART PWWP_4 139 207 IPR000313 -
Mtr8g0808 949 ProSiteProfiles Extended PHD (ePHD) domain profile. 572 687 IPR034732 -
Mtr8g0808 949 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 949 - -
Mtr8g0808 949 CDD PHD_ATX3_4_5_like 520 566 IPR042011 -
Mtr8g0808 949 SUPERFAMILY SET domain 795 949 IPR046341 -
Mtr8g0808 949 CDD PHD_TCF19_like 322 372 - -
Mtr8g0808 949 Pfam PHD-finger 321 374 IPR019787 -
Mtr8g0808 949 ProSiteProfiles SET domain profile. 807 924 IPR001214 GO:0005515
Mtr8g0808 949 Gene3D - 413 495 IPR010919 -
Mtr8g0808 949 SUPERFAMILY SAND domain-like 418 478 IPR010919 -
Mtr8g0808 949 SUPERFAMILY Tudor/PWWP/MBT 137 259 - -
Mtr8g0808 949 SUPERFAMILY FYVE/PHD zinc finger 319 380 IPR011011 -
Mtr8g0808 949 SMART PHD_3 321 373 IPR001965 -
Mtr8g0808 949 SMART PHD_3 631 687 IPR001965 -
Mtr8g0808 949 SMART PHD_3 520 567 IPR001965 -
Mtr8g0808 949 ProSitePatterns Zinc finger PHD-type signature. 521 566 IPR019786 -
Mtr8g0808 949 Pfam PWWP domain 142 237 IPR000313 -
Mtr8g0808 949 ProSiteProfiles Zinc finger PHD-type profile. 518 569 IPR019787 -
Mtr8g0808 949 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 570 688 IPR013083 -
Mtr8g0808 949 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 515 569 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0808 Mtr-Chr8 10061289 10071717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0808 275 346 EF-hand Containing Proteins AT5G28340 58.333 1.87e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr8g0808 zf-HC5HC2H_2 7.2e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0808 - - cam:101496041 1504.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0808 8 10061289 10071717 Mtr8g0808 8 10061289 10071717 ECH