Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0794 ATGGATTCAGATAGTACTGTTTCTTCATTGATCATGATGGATGAAGATTTGCATCCACATCAGTTTTCATCTTCAACAACTTCTAAGCTACATAGTAATGGTACTCCTACTTCTACTAGTGTTCATGAGCTTCTTGAATGTCCTGTTTGTACTAATTCAATGTACCCTCCAATTCATCAGTGTCACAATGGGCATACCCTATGTTCAACTTGTAAGACTAGGGTACACAACAGGTGCCCAACTTGCAGACAGGAACTGGGCGATATTCGGTGTTTAGCATTGGAAAAAATAGCAGAATCACTTGAACTTCCTTGCAGATACACCTCTGTTGGCTGTCCAGAGATATTTCCCTATTACAGCAAACTCAAACACGAGTCTATTTGTAACTTCAGACCTTATAACTGCCCTTATGCCGGATCAGACTGTTCTGTTGTCGGTGATATTTCACAGCTTGTTGCTCATTTAAGGGACGACCACAGAGTTGATATGCATTCTGGATGCACTTTTAATCATCGTTATGTCAAGTCAAATCCCATGGAAGTAGAAAATGCTACATGGATGTTAACAGTCTTCCACTGTTTTGGACAATATTTCTGTCTCCATTTTGAAGCCTTTCAACTTGGAATGGCTCCAGTTTACATGGCATTTCTCCGTTTCATGGGAGATGAAAGAGATGCCAGGAGCTACAGCTACAGTCTTGAGGTAGGAGGGAGCGGACGCAAACTAATCTACGAGGGCAGTCCAAGGAGCATTAGAGACAGCCACAAGAAAGTTAGAGACAGTCATGATGGCCTCATTATATACCGGAACATGGCACTTTTCTTCTCTGGTGGAGATAGGAAAGAGCTGAAGTTACGAGTAACAGGAAGGATATGGAAAGAACAGCAAAACCCTGAAGGTGGAGTTTGCATACCCAACTTGTGTAGCTAG 930 0.4215 MDSDSTVSSLIMMDEDLHPHQFSSSTTSKLHSNGTPTSTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYTSVGCPEIFPYYSKLKHESICNFRPYNCPYAGSDCSVVGDISQLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDERDARSYSYSLEVGGSGRKLIYEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLCS* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0794 309 SUPERFAMILY RING/U-box 35 86 - -
Mtr8g0794 309 ProSiteProfiles Zinc finger RING-type profile. 47 83 IPR001841 -
Mtr8g0794 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 159 288 IPR008974 GO:0005515
Mtr8g0794 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 301 - -
Mtr8g0794 309 CDD Sina 161 289 - -
Mtr8g0794 309 Pfam Seven in absentia protein family 89 288 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mtr8g0794 309 CDD RING-HC_SIAHs 45 83 - -
Mtr8g0794 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 99 IPR013083 -
Mtr8g0794 309 PANTHER UBIQUITIN LIGASE SINAT3 1 301 - -
Mtr8g0794 309 SUPERFAMILY TRAF domain-like 100 292 - -
Mtr8g0794 309 ProSiteProfiles Zinc finger SIAH-type profile. 100 160 IPR013010 GO:0008270
Mtr8g0794 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 155 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0794 Mtr-Chr8 9824474 9828471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0794 10 295 C3H Transcription Factor Family AT2G41980 72.378 4.46e-159 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0794 K04506 - gmx:100792687 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0794 8 9824474 9828471 Mtr8g0794 8 9824474 9828471 ECH