Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0793 ATGAAGATTGAAGTGGGTTTAGGAGGAAATAGGTTATGGAATGAAGATGAAAAAGCTATGGTGGTTGAAGTTTTAGGTGTTAATGCTTTTGATTATTTGGTTACAAATTCAGTTTCAAATGAGAATCTTTTGACAGCAATTGGGAGTGGTGAGAATCTTGAAAACAAGCTTTCTGATCTAGTTGAAAGATCTAATGTTTCGAATTTCAGTTGGAATTATGCGATATTTTGGCGAATTTCTCAGTCAAAGTTTGGTGATTGGGTTTTAGGTTGGGGAGATGGGTGTTGTAGGGAACCTAAAGAGGAGGAAAAGGAACAAAATTTGGGGTTGAAAAGTGTTGTTGAAGATGAAAAGCAACAAAGAATGAGGAAAAGGGTGTTGCAGAAGCTTCATGCAACATTTGGTGGTTTAGATGATGACAATTATGCTTTTGGATTGGACTGTGTGACCGATACGGAGATGTTCTTTCTTGCATCAATGTATTTCTCTTTTCCTAATGGACATGGTGGACCAGGTAAGTGTTTTGCATCTGGGAAGCATTTGTGGTTATGTGATGCATTGAAATCCAGTAGCTCTGATTATTGTGTTAGGGCTTTTTTGGCTAAATCTGTTGGATTTAAGACTATCGTTTTAGTTCCTACTGATTTAGGTGTTGTTGAATTGGGTTCTGTTAGAACGGTTGGTGAGAGCGTTGAATTGTTGCAAACTATTAAATCTGTGTTTTCGACACAATCATCGTTTGCTAGGGCTAAGTCGATTTCATCGTTGGATGGAAAGAGAGATGAGAATTCTCCTTTTTCTTGTTTGAAAGTTGGGGAGAGTGTTAAGAACAATAGTAATAATAATGGTAATCTTCATCTTCATCATCAGAATAATAATAATCATGGTAGAGTTGAGGGGATTGGAGTTCCCAAGATTTTTGGGCAGGATTTGAACTCGGCCACACATTTTCGGGAGAAACTTGCTATTAGAAAAATGGATGATAGACAATCATGGGGAGGCCGTCCGAATGGGAATGGAATTAGTTTTCCAAATGGTGTTCATGGTTCAAGTTGGAGAGGTAGTCAAGTTGTGAGGCAGCATGCGCCTGTCGATGTTTTTGCTCCTAGGCCTTCATCGAGCAATGCAGCCGAGCTAGCAAATGGTGGGAGGCAAGATTTCGTGCTCAACAACTATCAACAGCAACGGAAGCCACAAATGCAAATTGATTTTTCAGGAGCCACATCGAGACCTTCAGTGAGATCAATTGTTGGTGAATCGGAGCTTTCTGATGTTGAAGCTTCTTGCAGAGAGGAGAATCCCAGTCCCTCCGATGATAGGAGGCCAAGGAAACGTGGCAGAAAGCCAGCAAATGGAAGGGTAGAACCCCTCAATCATGTGGAGGCAGAGAGGCAAAGACGCGAGAAGCTAAACCAGCGTTTTTACGCATTACGAGCTGTTGTGCCGAATATTTCCAAGATGGACAAAGCATCTTTGTTGGGAGATGCTATTGCTTACATCAACGAGCTTCAAGCAAAACTCAAGACCATGGAATCTGAGAGAGAGCAATTAGGAATCACTTCTAGAGATGGATCATCATCGGCACCGCCGGCAAACTCTAGAGCAGAAAATCCTCAAAGTAGAGCTCCTGATATCGATATTCAAGCTGCACAAGATGGAGTTATCGTAAAGGTGAGTTGTTCTATTGATGTTCATCCTATTTCAAAAGTCATCCAATCATTCAAAGACACCGAAATCGATATCGTTGAGTCGAAACTCAATGCTGCAAATGATACTGTCTTCCACACATTCATAATTAAGTCACAAGGTTCCGAGCAGCTGACAAAGGAGAAGTTGATTGCAGCATTTTCCAAAGAAACCAACTCCTTATAG 1872 0.4092 MKIEVGLGGNRLWNEDEKAMVVEVLGVNAFDYLVTNSVSNENLLTAIGSGENLENKLSDLVERSNVSNFSWNYAIFWRISQSKFGDWVLGWGDGCCREPKEEEKEQNLGLKSVVEDEKQQRMRKRVLQKLHATFGGLDDDNYAFGLDCVTDTEMFFLASMYFSFPNGHGGPGKCFASGKHLWLCDALKSSSSDYCVRAFLAKSVGFKTIVLVPTDLGVVELGSVRTVGESVELLQTIKSVFSTQSSFARAKSISSLDGKRDENSPFSCLKVGESVKNNSNNNGNLHLHHQNNNNHGRVEGIGVPKIFGQDLNSATHFREKLAIRKMDDRQSWGGRPNGNGISFPNGVHGSSWRGSQVVRQHAPVDVFAPRPSSSNAAELANGGRQDFVLNNYQQQRKPQMQIDFSGATSRPSVRSIVGESELSDVEASCREENPSPSDDRRPRKRGRKPANGRVEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKTMESEREQLGITSRDGSSSAPPANSRAENPQSRAPDIDIQAAQDGVIVKVSCSIDVHPISKVIQSFKDTEIDIVESKLNAANDTVFHTFIIKSQGSEQLTKEKLIAAFSKETNSL* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0793 623 SMART finulus 460 509 IPR011598 GO:0046983
Mtr8g0793 623 MobiDBLite consensus disorder prediction 328 348 - -
Mtr8g0793 623 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 53 241 IPR025610 -
Mtr8g0793 623 MobiDBLite consensus disorder prediction 513 543 - -
Mtr8g0793 623 Pfam Helix-loop-helix DNA-binding domain 458 504 IPR011598 GO:0046983
Mtr8g0793 623 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 454 503 IPR011598 GO:0046983
Mtr8g0793 623 MobiDBLite consensus disorder prediction 519 539 - -
Mtr8g0793 623 Coils Coil 493 520 - -
Mtr8g0793 623 CDD bHLH_AtAIB_like 451 528 - -
Mtr8g0793 623 Gene3D - 450 518 IPR036638 GO:0046983
Mtr8g0793 623 Coils Coil 100 120 - -
Mtr8g0793 623 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 1 621 - -
Mtr8g0793 623 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 457 520 IPR036638 GO:0046983
Mtr8g0793 623 MobiDBLite consensus disorder prediction 401 416 - -
Mtr8g0793 623 PANTHER MYC 1 621 IPR045084 GO:0003700|GO:0006355
Mtr8g0793 623 MobiDBLite consensus disorder prediction 401 465 - -
Mtr8g0793 623 MobiDBLite consensus disorder prediction 424 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0793 Mtr-Chr8 9793504 9796244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0793 9 623 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.452 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr8g0793 bHLH-MYC_N 8e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0793 - - gmx:100807078 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0793 8 9793504 9796244 Mtr8g0793 8 9793504 9796244 ECH
Mtr7g3885 7 55661636 55663954 Mtr8g0793 8 9793504 9796244 PCT