Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0792 ATGGAGCAGCAACAACATTTGAACTTCACAACCAAACCTGACGTGGCAGTAAAAACCCTAACAACAAAGAATCCCGCCGCCCAATCTGGCCGTGGCGGAACCAGACATCCGGTTTTCCACGGCGTCAGGAAAAGGCGGTGGGGAAAATGGGTGTCAGAGATTAGAGAGCCAAGAAAAAAGTCAAGAATATGGCTAGGGTCTTTTCCGGCGCCGGAGATGGCTGCAAAGGCTTATGATGTTGCTGCATATTGTTTGAAAGGTTGTAAAGCACAGCTGAATTTTCCTGATGAAGTGCACCGTCTGCCGGTGCTTCCTCCGCCGTCTTTGTGTACTGCTAGGGATATTCAAGCTGCGGCGGCTAAAGCAGCTCGTATGATGGTTAAGGCTGTTGCTTCGCCGGAGGATAGTAGCAATGATTCTGGTGGTAGTGGTGGTGGTGATGATTTTTGGGGTGAGATTGAGTTGCCGGAGCTTGTTAATGGAACGTGGTGGAGTTACTCTGTTGCGGTGGTGCCGGAGATTGAACTTCCGTAG 534 0.5037 MEQQQHLNFTTKPDVAVKTLTTKNPAAQSGRGGTRHPVFHGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGCKAQLNFPDEVHRLPVLPPPSLCTARDIQAAAAKAARMMVKAVASPEDSSNDSGGSGGGDDFWGEIELPELVNGTWWSYSVAVVPEIELP* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0792 177 Gene3D AP2/ERF domain 38 96 IPR036955 GO:0003700|GO:0006355
Mtr8g0792 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 177 - -
Mtr8g0792 177 SUPERFAMILY DNA-binding domain 38 97 IPR016177 GO:0003677
Mtr8g0792 177 Pfam AP2 domain 37 87 IPR001471 GO:0003700|GO:0006355
Mtr8g0792 177 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Mtr8g0792 177 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 2 177 - -
Mtr8g0792 177 CDD AP2 39 96 IPR001471 GO:0003700|GO:0006355
Mtr8g0792 177 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Mtr8g0792 177 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Mtr8g0792 177 PRINTS Ethylene responsive element binding protein signature 77 97 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0792 Mtr-Chr8 9766808 9767579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0792 5 165 AP2-EREBP Transcription Factor Family AT1G01250 56.140 2.03e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr8g0792 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0792 K09286 - gmx:100802845 226.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0792 8 9766808 9767579 Mtr8g0792 8 9766808 9767579 ECH
Mtr7g3886 7 55683210 55683930 Mtr8g0792 8 9766808 9767579 PCT