Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0790 ATGGCACATCTTGAGTGTAATCTAAGGGTCCCAGGAGGAAGTTCTCAACAAGAAAAAGGTGTTAAAAATGATGATTTGTATGAAGAGTTATGGAAGTTGTGTGCAGGACCTTTGGTGGATGTTCCTAATACTGGTGACAGAGTTTTCTACTTTCCTCAAGGTCACATGGAACAACTGCAAGCATCCACTGATCAGGAATTGAATCAGGAAATTCCACATTTCAATTTACCGTCGAAGATTTTATGCCGTGTCGTCAATATTCAGTTGTTGGCTGAGCAAGAAACTGATGAGGTTTATGCTTGTGTTGCTTTGCTTCCAGAATCAGATCAAACTGAGCCTGTAGATCCTGATCCAAATCCTTCTGATTCTCCAAAACAGAAGTTTCACTCATTTTGCAAAATATTAACTGCATCTGATACTAGCACACATGGTGGATTTTCAGTTCTGAGGAAACATGCTACCGAGTGCTTGCCGCCATTGGACATGGCACCAGCAACTCCAACTCAGGAGCTAGCAGCAAAGGATCTTCATGGATTTGAGTGGAAGTTTAAACACATATATAGAGGTCAACCGAGGAGGCACTTGCTTACAACCGGCTGGAGTACATTTGTCGCATCCAAAAGATTGGTGGCCGGAGATGCTTTTGTTTTCCTAAGGGGAGAGAACGGGCAACTGAGAGTTGGCGTTAGGCGTATAGCTAAGCAGCACAGTCCTATGCCTTCATCTGTGATATCAAGCCAAAGCATGCATCTTGGTGTGCTTGCTACTGCTTCCCATGCTGTTATGACTCGTACCATGTTTGTCGTTTATTACAAACCAAGGACTAGTCAGTTTATTGTTGGTTTGAATAAGTATTTGGAGGCAGTCAACAATCATAAATTTTCTGTTGGCATGAGATTCAAGATGAGATTTGAAGGAGAGGACTCACCTGAAAGAAGATTTTCTGGCACTATTGTTGGGGTTGGTGATGTTTCTGCAGGATGGTCAAATTCTCACTGGAGATCATTGAAGGTTCAATGGGATGAAGCAGCAACAATTCCAAGACCAGAAAGAGTTTCTTCATGGGAGATAGAACCTTTTATAGCTTCTCCTACTTTGAATGTCGCTCAAACATCAGTCAAAAGCAAAAGATCTAGGCCTGCCGATGTTTCATCTTGCGGTTTTTGGTATCCGGGATCTTCCCAAGCTCACGAGCACACCCAATTAACCGGTGCTGCCGAATTCCAAGGCAAGGAGAGTCAGATTGTAAGCTCAAGAGTCTTGGTGGAAGGGATTTGGCCTAATTCACCACATTTGAATGTAACTTCCAACCCTTACGCTAACACAAACATCGCATCTAGACCGAGCGATGGCCTCACATGCGACCGAGTAGAAGACCCGAAAAAGAACGAGAATCCTCTAGATTGTTGGTTATTTGGAGTTAATTTGAATAACAAAAACAAATCTTGCAGTGTTAATTCTTGTTTAGAGAAAGAACTTGGATGTCCAAGTTTAACCATTGTTACTACAAGTGGTCCCAAAGAATCTATTATCCTTACCACCAACGCATGTGAAACTGAAAAGGTTCAGAGTCCTAACTATTCACTGTCCAACAAGGGGCAGCAGAAGAAAATAATTTCTGATGCATCACCAAATGAATGGCAGAACAAGCTGGCTACTGTACCATCCATGAGAACAAGGACTAAGGTGCAAATGGAAGGTGTAGCTGTTGGTCGTGCACTTGACTTAACCATGTTAAGTGGTTATGATGAACTCATAGATGAAGTTGAAAAATTATTTGATATTAAAGGAGAGTTACGTTCACAAAACAAATGGAGAGTTACTTTCACTGATAATGAAAATGACATGATGCTTGTCGGTGATGATCCATGGCCGGAATTTTGCAACATGGTAAAGAAGATTTTCATTTGTTCAAATGAGGAATTAAAGAAAATGAAATGCAAGTTACCTAATTCTTCATTAGAGATTGAAGAGACATTGTTGAGTCTAGATTCACAGAATAGGGATGAGAATCAACAAACTCATGTGACTTAA 2034 0.411 MAHLECNLRVPGGSSQQEKGVKNDDLYEELWKLCAGPLVDVPNTGDRVFYFPQGHMEQLQASTDQELNQEIPHFNLPSKILCRVVNIQLLAEQETDEVYACVALLPESDQTEPVDPDPNPSDSPKQKFHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMAPATPTQELAAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGENGQLRVGVRRIAKQHSPMPSSVISSQSMHLGVLATASHAVMTRTMFVVYYKPRTSQFIVGLNKYLEAVNNHKFSVGMRFKMRFEGEDSPERRFSGTIVGVGDVSAGWSNSHWRSLKVQWDEAATIPRPERVSSWEIEPFIASPTLNVAQTSVKSKRSRPADVSSCGFWYPGSSQAHEHTQLTGAAEFQGKESQIVSSRVLVEGIWPNSPHLNVTSNPYANTNIASRPSDGLTCDRVEDPKKNENPLDCWLFGVNLNNKNKSCSVNSCLEKELGCPSLTIVTTSGPKESIILTTNACETEKVQSPNYSLSNKGQQKKIISDASPNEWQNKLATVPSMRTRTKVQMEGVAVGRALDLTMLSGYDELIDEVEKLFDIKGELRSQNKWRVTFTDNENDMMLVGDDPWPEFCNMVKKIFICSNEELKKMKCKLPNSSLEIEETLLSLDSQNRDENQQTHVT* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0790 677 Pfam AUX/IAA family 602 641 IPR033389 -
Mtr8g0790 677 Pfam AUX/IAA family 555 594 IPR033389 -
Mtr8g0790 677 Gene3D - 293 364 - -
Mtr8g0790 677 Gene3D - 554 646 - -
Mtr8g0790 677 MobiDBLite consensus disorder prediction 1 20 - -
Mtr8g0790 677 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 423 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr8g0790 677 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 440 652 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr8g0790 677 PANTHER AUXIN RESPONSE FACTOR 11 12 423 - -
Mtr8g0790 677 PANTHER AUXIN RESPONSE FACTOR 11 440 652 - -
Mtr8g0790 677 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Mtr8g0790 677 Gene3D - 128 232 IPR015300 -
Mtr8g0790 677 SMART B3_2 131 233 IPR003340 GO:0003677
Mtr8g0790 677 Pfam B3 DNA binding domain 131 231 IPR003340 GO:0003677
Mtr8g0790 677 CDD B3_DNA 129 231 IPR003340 GO:0003677
Mtr8g0790 677 SUPERFAMILY DNA-binding pseudobarrel domain 123 260 IPR015300 -
Mtr8g0790 677 ProSiteProfiles PB1 domain profile. 558 639 IPR000270 GO:0005515
Mtr8g0790 677 Pfam Auxin response factor 257 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr8g0790 677 SUPERFAMILY CAD & PB1 domains 553 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0790 Mtr-Chr8 9719765 9724949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0790 26 645 B3 DNA Binding Superfamily AT4G23980 56.467 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr8g0790 B3 8.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0790 K14486 - gmx:100795763 1032.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0790 8 9719765 9724949 Mtr8g0790 8 9719765 9724949 ECH