Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0773 ATGAGGCCGGTTTTCGCTGGAAATTTGGAGTACGATACTCGTCAATCAGAACTTGAACGCTTGTTCTCAAAGTATGGAAGAATTGAACGTGTTGATATGAAATCTGGATTTGCCTTTGTCTATTATGAAGACGAACGTGATGCTGAAGAAGCAATTCGTGCGCTTGACAATATTCCATTTGGTCATGACAAGCGACGGCTATCTGTGGAGTGGGCTAGGGGTGAACGTGGGCGTCACCGTGATGGCTCAAAGCCAAACCAGAAGCCCACTAAGACTCTATTTGTGATTAACTTTGACCCGATTCGCACTAGAGTTAGTGATATAGAGAGACACTTTAAACCTTATGGGCCGCTTCATCATGTTCGAATTCGTCGGAACTTTGCATTTGTGCAGTATGAAACACAAGAAGATGCTACTAAAGCCTTAGAGTGTACAAATATGAGTAAGATACTGGATAGGGTGGTGTCTGTAGAGTATGCTCTGAGGGATGATAGTGACAGGGTCGACAATTATGGTGGCAGTCCCAGAAGAGGAGGGGGTCTTGCTAGATCTCCCAGTCCAGGTTATCGCAGGCGACCAAGTCCAGACTATGGCCGTCCACGTAGTCCTGTGTATGATAGGTATACTGGACCGGACAGGCGGAGGAGTCCTGATTATGGCAGGAACAGGAGTCCCGATTATGGCAGGAACAGGAGTCCTGAATATGGCAGATACCGCAGTCGTTCACCAGTGCGAAGGTCGAGAACTTAG 750 0.472 MRPVFAGNLEYDTRQSELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPFGHDKRRLSVEWARGERGRHRDGSKPNQKPTKTLFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNYGGSPRRGGGLARSPSPGYRRRPSPDYGRPRSPVYDRYTGPDRRRSPDYGRNRSPDYGRNRSPEYGRYRSRSPVRRSRT* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0773 249 MobiDBLite consensus disorder prediction 165 249 - -
Mtr8g0773 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Mtr8g0773 249 SMART rrm1_1 92 158 IPR000504 GO:0003723
Mtr8g0773 249 SMART rrm1_1 3 70 IPR000504 GO:0003723
Mtr8g0773 249 Gene3D - 1 82 IPR012677 -
Mtr8g0773 249 Gene3D - 83 171 IPR012677 -
Mtr8g0773 249 MobiDBLite consensus disorder prediction 206 241 - -
Mtr8g0773 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Mtr8g0773 249 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 204 - -
Mtr8g0773 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Mtr8g0773 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Mtr8g0773 249 SUPERFAMILY RNA-binding domain, RBD 2 162 IPR035979 GO:0003676
Mtr8g0773 249 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 5 204 IPR029537 GO:0000398|GO:0005681
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0773 Mtr-Chr8 9547970 9550879 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0773 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 23.370 3.33e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0773 K12893 - gmx:100797709 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0773 8 9547970 9550879 Mtr8g0773 8 9547970 9550879 ECH