Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0770 ATGATGGTTGTAGATTTTCTTAGTTCTGGTCCTACCTCAACTGCAATTTCTCAAATCATAGAAACTATTGGTGAGTTTCTATGCAGTGCTAATGATGTACTTGTGAATAAAGATAGTTTTAAGGAACTTAGTTCTTATTTGGAAAGAATTGCGCCGATTTTGAAAGAATTGAGGAATGAAAAAGTGAGTGATTCTGAGGCATTCAACCGTGCCATTGATATTATGAATCGCGAAACGAAAGCTGCAAAGCTACTTGCTCAGGAATGTGGTAAGAAGAGCAGGGTTTATTTGTTAATGAATTGTAGGTCGATTGTAAATCGGTTAGAAAATCACACGAAGGAGCTAAGCAAGGCGCTTGGTCTTCTTCCTTTATCAGCATCAGGTCTTTCAGCCGGAATATTGGAAGAAATAAAAAAGGTTTGTGATAATATGGAGAAAGCTGGATTTAAGGCTGCGGTAGCGGAAGAAGAGATTTTAGAGAAAATCGAGTCAGGAATAAGGGAAAACAGTTTTGATCGTAAGCATGCAAATAATTTAATAAATCTCATTGCTAAGGCTGTTGGAATTACAAATGAGAAGTCGACAATGAAGGCTGAACTTGAAGAGTTTAAGAAAGAAATCGAAAATGCTCGTGTTGATAAGAAAAAGGCTGAAGCTATGCAAATGGATCAAATCATTGCTTTGTTGGAAAGAGCTGATGCAGCCTCATCACCGAACGAAAGGAAACTGAAATACTTCGCGAAACGGCAATCTTTAGGTACTCGAATCTTGGAGCCTTTACAGTCATTTTATTGTTCTATCACACATGATGTTATGGTGGAACCTGTTGAAACTTCATCAGATCAAACATTTGAGAGAAGTGCAATAGAAAAGTGGTTTGAAGAAGGAAACAAGTTGTGTCCTTTGACATTGATTCCTTTAGATACGTCGGTTTTGAGACCTAACAAAACATTGAAACAATCCATAGAAGAATGGAAAGATAGAAATACAATGATTACAATTGCTACTTTGAAAGAAAAAATACATCAGTTTGGAGATGATGATGAAGTGATAAGTTGTCTAAAAACTCTTGAGGATTTGTGTGAGCAGAGAGAGCAACACAGGGAATGGATGATACTTGAGGACTACATACAAGTTCTTATACAAATTCTTGGTTCGAGAAACCGCGATATAAGGAATCGTGCTCTTGTCATCCTTTGCGTTCTAGCAAAAGATAATGAAGAAGCTAAGGAAAGAATTGTAACAGTTGATAATGCTATTGAATCGATCGTCCATTCTCTTGGACGACGTCAGGAGGAAAGGAAGTTAGCAGTTGCATTACTGCTTGAATTATCCAAATATGATTTGGCACGAGAACACATTGGAAAAGTTCAAGGTTGCATACTTCTACTGGTGACTATGTCTAATGGTGATGACAATCAAGCTGCTAGAGATGCAACTGAAGTATTGGATAATCTTTCATACTCTGATCAGAATGTTATACTGATGGCAAAGGCAAACTATTTCAAGCATTTACTGCAACGTCTCTCCACAGGAGCAGATGATGTAAAGATGATTATGGCCAAAACATTAGCCGAAATGGAATTAACTGACCACAATAAGGAGTCCTTATTTGTTGGTGGTGTACTTGCTCCTCTTCTTCACTTGTTCTTGCATAATGATCTTCAGGTGAAAACAGTGGCCACAAAAGCTCTTAAGAATCTATCGAGTTTAAATAGAAATGGACTTGAAATGATTCGACAAGGGGCCGTGCGACCGTTGCTCGATCTCCTTTACCATCATAGCATACACACATCAAGTTTATGGGAAGATGTAGCAGCCATTATTATGCAACTTGCTGCGTCAACTATCTCTCAAGATATCCAAACACCGGTTTTGTTACTAGATTCTGATGATGATGTTTTTAACCTTTTCCCTTTAATCAGTGTGACACAACCTGGCGTGCAACAAAACATTATTCAGACCTTTTATGCCTTGTGTCAGTCACCTTCGTCTTCAAATATCAAGACGAAGCTAAATGAGTGCTCGGCTATACCAGAATTGGTTAGGTTGTGTGAGAGTGAGAATCTAAACCTAAGAGCAAGTGCTATAAAGTTGTTTTCATGCTTGGTAGAAAGTTGTGATGAATCCATCATAGTAGAGCATGTTGATCAGAAATGCATCAATACTTTACTTCAGATCCTACAATCCTCATCTGATGACGAGGAAATACTTTCTGCTATGGGAATAATATGCCATCTTCCAGAAATTGATCAGATAACTCAATGGATTCTAGATGCTGGCGTACTTCCAATCATTTATAAATATGTTCAAGACGGTAGAGACCGAGATCTTCAAAGGAGTAACTTAGTCGAGAAAGCAGTCGGTGCCTTACGTCGTTTTACGGTTCCAACACACTTGGAGTGGCAAAAAATTGTAGCTGAAACTGGTATTATAACTGTTTTAGTGCAGTTGCTTGAAAGTGGATCAACCTTGACAAAACAAAGTGCAGCGTTATGTCTTGCTGAATTTTCTAAAAGCTCGGTTAGTCTCAGCAGACCGATTCCGAAGCAAAAAGGACTACTATGTTGTTTCTCAGCTCCAAGCGAAATTGGCTGTAAAGTTCATGGAGGAGTATGCACTGTCAAGTCATCATTCTGTCTCTTAGCTGCTGAAGCAATTGGACCACTCACAAGAAATCTTGGAGAATCTGATTATGGAGTTTGTGAGGCTTCTTTGGATGCTTTATTAACATTGATTGAAGGTGAAAAACTAGAGAGTGGTGGTAAAGTGCTTGCTAAAGCAAATGCAATACCATTAATAATAAAATTTCTTAGTTCTACTTCTCTTGGGTTGCAAGAAAAGTCTCTACATGCTTTGGAAAGGATTTTTCAGCTAGCAGAGTTCAAACAGTTATATGGAGCCTCAGCTCAAATGCCTCTAGTTGACTTAACTCAGAGGAGTAATGGTAGAGTTAGATCCATGTCAGCAAGAGTATTGGCTCATTTGAATGTTCTTCATGATCAGTCTTCATACTTTTAA 3021 0.3823 MMVVDFLSSGPTSTAISQIIETIGEFLCSANDVLVNKDSFKELSSYLERIAPILKELRNEKVSDSEAFNRAIDIMNRETKAAKLLAQECGKKSRVYLLMNCRSIVNRLENHTKELSKALGLLPLSASGLSAGILEEIKKVCDNMEKAGFKAAVAEEEILEKIESGIRENSFDRKHANNLINLIAKAVGITNEKSTMKAELEEFKKEIENARVDKKKAEAMQMDQIIALLERADAASSPNERKLKYFAKRQSLGTRILEPLQSFYCSITHDVMVEPVETSSDQTFERSAIEKWFEEGNKLCPLTLIPLDTSVLRPNKTLKQSIEEWKDRNTMITIATLKEKIHQFGDDDEVISCLKTLEDLCEQREQHREWMILEDYIQVLIQILGSRNRDIRNRALVILCVLAKDNEEAKERIVTVDNAIESIVHSLGRRQEERKLAVALLLELSKYDLAREHIGKVQGCILLLVTMSNGDDNQAARDATEVLDNLSYSDQNVILMAKANYFKHLLQRLSTGADDVKMIMAKTLAEMELTDHNKESLFVGGVLAPLLHLFLHNDLQVKTVATKALKNLSSLNRNGLEMIRQGAVRPLLDLLYHHSIHTSSLWEDVAAIIMQLAASTISQDIQTPVLLLDSDDDVFNLFPLISVTQPGVQQNIIQTFYALCQSPSSSNIKTKLNECSAIPELVRLCESENLNLRASAIKLFSCLVESCDESIIVEHVDQKCINTLLQILQSSSDDEEILSAMGIICHLPEIDQITQWILDAGVLPIIYKYVQDGRDRDLQRSNLVEKAVGALRRFTVPTHLEWQKIVAETGIITVLVQLLESGSTLTKQSAALCLAEFSKSSVSLSRPIPKQKGLLCCFSAPSEIGCKVHGGVCTVKSSFCLLAAEAIGPLTRNLGESDYGVCEASLDALLTLIEGEKLESGGKVLAKANAIPLIIKFLSSTSLGLQEKSLHALERIFQLAEFKQLYGASAQMPLVDLTQRSNGRVRSMSARVLAHLNVLHDQSSYF* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0770 1006 CDD RING-Ubox_PUB 263 303 IPR045210 -
Mtr8g0770 1006 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Mtr8g0770 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 337 IPR013083 -
Mtr8g0770 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1006 - -
Mtr8g0770 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1006 - -
Mtr8g0770 1006 Gene3D - 14 126 IPR036537 GO:0007166
Mtr8g0770 1006 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 541 583 IPR000225 GO:0005515
Mtr8g0770 1006 SUPERFAMILY ARM repeat 344 996 IPR016024 -
Mtr8g0770 1006 Gene3D - 872 1004 IPR011989 -
Mtr8g0770 1006 Gene3D - 432 854 IPR011989 -
Mtr8g0770 1006 Gene3D - 338 431 IPR011989 -
Mtr8g0770 1006 Coils Coil 186 220 - -
Mtr8g0770 1006 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Mtr8g0770 1006 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Mtr8g0770 1006 SMART arm_5 406 446 IPR000225 GO:0005515
Mtr8g0770 1006 SMART arm_5 665 705 IPR000225 GO:0005515
Mtr8g0770 1006 SMART arm_5 447 488 IPR000225 GO:0005515
Mtr8g0770 1006 SMART arm_5 364 404 IPR000225 GO:0005515
Mtr8g0770 1006 SMART arm_5 918 958 IPR000225 GO:0005515
Mtr8g0770 1006 SMART arm_5 799 839 IPR000225 GO:0005515
Mtr8g0770 1006 SMART arm_5 571 614 IPR000225 GO:0005515
Mtr8g0770 1006 SMART arm_5 530 570 IPR000225 GO:0005515
Mtr8g0770 1006 SMART arm_5 750 796 IPR000225 GO:0005515
Mtr8g0770 1006 SUPERFAMILY RING/U-box 249 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0770 Mtr-Chr8 9523457 9528671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0770 261 1006 U-box Gene Family AT1G76390 28.662 3.91e-62 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0770 - - gmx:100787128 1466.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0770 8 9523457 9528671 Mtr8g0770 8 9523457 9528671 ECH
Mtr8g0770 8 9523457 9528671 Mtr7g3895 7 55746820 55752954 ECH