Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr8g0748 | ATGTCTCAACAAAGACAACCTCATATGGTGAGTGGTAACAATAATCAAGACCAATATAATGACACAACATTTACCAAATTATTTGTTGGAGGGTTAGCTTGGGAAACTCAAAGGGAAACAATGAGAATGTATTTTGAACAATTTGGAGAGATCTTAGAAGCTGTTGTTATCACTGATAAGTATACTGGAAGATCTAAAGGTTATGGTTTTGTGACATTTAAGGATCCAGAAGCAGCTATAAGAGCATGTCAAAATCCATCTCCAGTTATTGATGGAAGAAGAGCAAATTGCAATATTGCTTCTCTTGGTGCTAACAAGAATCGATCACTAACTCTTCACCATGGAAGGTTTAGGCCTCCACATGGAGTGGTACCATCAGTTCCTTATCATGGTTCTTCATCCACAGTTTTCCATCAACCCACTAGACAGTACACATTTCCTTATTCAGCATATGGATATTCTGGATATTCACAAGACACATTGTATCCTGCGAACTATTACAATGTCTATGGAGTTCAACAATATTCACCTTACTACCCAGCTGTTGGAGCTTCTGGGGCAATGGGTTTGGTCCAAAATATGTACCCTTACTATGGTCAATATGCACAAAATATCCATGGTCATGGTTTTGGAGTTCAATACCCACAAATGACACAAATTCCAGTTTTGCCTCAGCATTATGGGTCACAAGGAATATTGACAATTCCTTCTTCAGTTACAATCCCAACCATTAGTGCTGCAACAGTAACTGCAACCACTACTACAATAGCAGCACCTGTGGCAGTAACAAGGGTTGGTACTTCACAAGCCTCTGGAACAGATACTGAACAACAACATTCTACATCTTGA | 849 | 0.391 | MSQQRQPHMVSGNNNQDQYNDTTFTKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQNPSPVIDGRRANCNIASLGANKNRSLTLHHGRFRPPHGVVPSVPYHGSSSTVFHQPTRQYTFPYSAYGYSGYSQDTLYPANYYNVYGVQQYSPYYPAVGASGAMGLVQNMYPYYGQYAQNIHGHGFGVQYPQMTQIPVLPQHYGSQGILTIPSSVTIPTISAATVTATTTTIAAPVAVTRVGTSQASGTDTEQQHSTS* | 283 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr8g0748 | 282 | SMART | rrm1_1 | 26 | 98 | IPR000504 | GO:0003723 | |
| Mtr8g0748 | 282 | Gene3D | - | 1 | 111 | IPR012677 | - | |
| Mtr8g0748 | 282 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 25 | 117 | IPR000504 | GO:0003723 | |
| Mtr8g0748 | 282 | SUPERFAMILY | RNA-binding domain, RBD | 7 | 112 | IPR035979 | GO:0003676 | |
| Mtr8g0748 | 282 | CDD | RRM_RBM24_RBM38_like | 25 | 100 | - | - | |
| Mtr8g0748 | 282 | PANTHER | BOULE-RELATED | 1 | 259 | IPR037366 | GO:0003729 | |
| Mtr8g0748 | 282 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 27 | 84 | IPR000504 | GO:0003723 | |
| Mtr8g0748 | 282 | PANTHER | - | 1 | 259 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr8g0748 | Mtr-Chr8 | 9017233 | 9020348 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr8g0748 | 21 | 101 | C2H2 Transcription Factor Family | AT2G19380 | 43.210 | 1.98e-15 | 74.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr8g0748 | - | - | gmx:100786208 | 407.527 |