Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0742 ATGTCGATCGGAGAAGTTGCTTGCAGCTACTCTCTTATGATTCTTCATGATGATAACATCGCCGTTACTGGTGAGAAAATCTCCACTTTGTTGAAAGCTGCAAATGTTAATGTTGAAGCTTACTGGCCAAGCTTATTCGCTAAACTTGCCGAGAAGAAGAACCTTGATGATTTGATATTGAATGCGGCTGGAGGTGGTGCTCCGGTTTCTGTTTCGGCCCCAGTTGTGGCTGCTGCCTCCACTGCAGTTGCTGCTCCTACCGAGGAGAAGAAGGAAGAACCCAAGGATGAGAGTGACGACGACATGGGATTCAGCTTGTTTGATTAG 327 0.4679 MSIGEVACSYSLMILHDDNIAVTGEKISTLLKAANVNVEAYWPSLFAKLAEKKNLDDLILNAAGGGAPVSVSAPVVAAASTAVAAPTEEKKEEPKDESDDDMGFSLFD* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0742 108 MobiDBLite consensus disorder prediction 86 102 - -
Mtr8g0742 108 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 99 - -
Mtr8g0742 108 MobiDBLite consensus disorder prediction 82 108 - -
Mtr8g0742 108 Pfam 60s Acidic ribosomal protein 22 107 - -
Mtr8g0742 108 Hamap 50S ribosomal protein L12 [rpl12]. 6 108 IPR027534 GO:0003735|GO:0005840|GO:0006414
Mtr8g0742 108 CDD Ribosomal_P1 5 107 - -
Mtr8g0742 108 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN 1 99 - -
Mtr8g0742 108 Gene3D - 1 62 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0742 Mtr-Chr8 8921348 8922664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0742 1 108 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 56.140 1.12e-38 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0742 K02942 - zju:107423779 128.642
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0742 8 8921348 8922664 Mtr8g0742 8 8921348 8922664 ECH
Mtr8g3495 8 45461738 45464639 Mtr8g0742 8 8921348 8922664 ECH