Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0727 ATGGAGTTGATGCAAGAAGTGAAAGATTATTCACAAGAGGAATTAGAGGAAGATGAAGAAGAAATCATGACAAAAACAACAAGAGAAGAAGAAGAAAGTAGTAGTAAGCAACAATTACAACACTGTACTTTTTCTTCTCCACCTTCTAATTTCTCTTTATCTTCTTCATCTCCTTCAACAACTCATCATCATAATCATAATCATAATCATAATCATAATCATGATGTTACAAATGTTTCTCATCAACAAAATCAATGGCTTGGAATGAATCATCATCATCATCATTCACCAGAATCTCACAATTCAGCAGCATCTAAAGGAGGATTAGGGTTATTACACCAACACCAACATCAAGATGCAACAACCTCAAATTTCACAAATTTAAAGCAAATAGATTTCATGGAATTGTCACTTGGTAACAACAACAATAACAAGAACAAAGATGTTGTTATTAATGATCCTGTTCCACAAGAGCAAGAACAACAACCTAGTACACATGAAAAAGAACACATGTTTGACAAAGCTGTAACACCAAGTGATGTTGGGAAACTAAACCGTTTGGTTATACCAAAACAACATGCTGAAAAGTATTTTCCACTTGATTCAACATCAAATGAGAAAGGTCTTCTTCTGAATTTTGAAGATAGAAATGGAAAATTGTGGAGATTTAGATACTCTTATTGGAACAGTAGCCAAAGCTATGTTATGACAAAAGGTTGGAGCCGTTTTGTTAAAGAGAAAAAACTTGATGCTGGCGACATTGTTTCGTTTCAACGCGGCGTCGGCGAATTGTTTAGGCATAGATTGTTTATAGATTGGAGGAGAAGATCTAATCATAATCATCATACTATTGATCCTTCATCAGCAACACTTTTCACTCCTTTCTTTCTTCCTAATCAACAACAATATTCTATTAGATGGGGAGGTGCTAATAGTAGATTTTACTCTCTTCCTTATCCAACACCACAAAGGTTACAACATCAACAACAAAATCATCATGACCCTTTACACAATCAGATGAATTTTAATCATAACATGTTTCCATTTCATCAATATGGTGGTGGAAATGTGAATCATCAATACAATTTTCATCATCATGATCCAAGTTCAGTTTTTTATATGAGATCATTAGCACCATCATCAATGTCAATGCCTCAAGGAAGCTTAAGTACAAGATCACAGCAACAAGAAGGAGGAGGAGGAAGCAATGTCTCAAACATGATTATTGATTCTGTTCCTGTTTCTCATTATCATCATCACCACGGAAATTTAACTAGTAATGCTACTACTAGTACTACTACTAATGGTGCTGCAAAAAGGTTAAGGTTGTTTGGTGTGAACATGGAGTGTGGTGGTTCTTCAACAAGTGATGATAACTTGGCTTCTCCTTCTTCAATAGTACCATCACTTCAACATTTGAAGGTACCTCATCATGAAGAAACACTTTCAAGTTCAACATCAACAAGATTTGAAGAGGATAAGAGAAGAGAAGAAGCTTCAATGATTTTTGGTTTAGATACTTCTTTGCAATATCATAATTACCAACAACAATGA 1554 0.3456 MELMQEVKDYSQEELEEDEEEIMTKTTREEEESSSKQQLQHCTFSSPPSNFSLSSSSPSTTHHHNHNHNHNHNHDVTNVSHQQNQWLGMNHHHHHSPESHNSAASKGGLGLLHQHQHQDATTSNFTNLKQIDFMELSLGNNNNNKNKDVVINDPVPQEQEQQPSTHEKEHMFDKAVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELFRHRLFIDWRRRSNHNHHTIDPSSATLFTPFFLPNQQQYSIRWGGANSRFYSLPYPTPQRLQHQQQNHHDPLHNQMNFNHNMFPFHQYGGGNVNHQYNFHHHDPSSVFYMRSLAPSSMSMPQGSLSTRSQQQEGGGGSNVSNMIIDSVPVSHYHHHHGNLTSNATTSTTTNGAAKRLRLFGVNMECGGSSTSDDNLASPSSIVPSLQHLKVPHHEETLSSSTSTRFEEDKRREEASMIFGLDTSLQYHNYQQQ* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0727 517 Pfam B3 DNA binding domain 172 276 IPR003340 GO:0003677
Mtr8g0727 517 MobiDBLite consensus disorder prediction 383 407 - -
Mtr8g0727 517 CDD B3_DNA 170 259 IPR003340 GO:0003677
Mtr8g0727 517 Gene3D - 165 285 IPR015300 -
Mtr8g0727 517 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 113 490 IPR044800 GO:0003700
Mtr8g0727 517 SUPERFAMILY DNA-binding pseudobarrel domain 168 275 IPR015300 -
Mtr8g0727 517 ProSiteProfiles B3 DNA-binding domain profile. 172 277 IPR003340 GO:0003677
Mtr8g0727 517 Coils Coil 1 32 - -
Mtr8g0727 517 MobiDBLite consensus disorder prediction 11 25 - -
Mtr8g0727 517 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 113 490 - -
Mtr8g0727 517 SMART B3_2 172 277 IPR003340 GO:0003677
Mtr8g0727 517 MobiDBLite consensus disorder prediction 37 62 - -
Mtr8g0727 517 MobiDBLite consensus disorder prediction 476 495 - -
Mtr8g0727 517 MobiDBLite consensus disorder prediction 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0727 Mtr-Chr8 8752325 8757536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0727 158 456 RAV Transcription Factor Family AT2G46870 46.000 9.11e-75 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr8g0727 B3 1.1e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0727 - - mtr:MTR_8g023990 938.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0727 8 8752325 8757536 Mtr8g0727 8 8752325 8757536 ECH