Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0712 ATGTCTGGTTCTAGAAAATCTAGAGCCAGACAAAGGCCTAACCCTTTGAAACAATCCAAATTGATCACAAGGAAATTGCAGCTTGTTTACGATGATCCCGACGCAACTGATTTATCTGAAGATGAGTCACAACAACCACGAACCACGACAAAAAGAAGTTTCGTTGAGGTCCCTCTCCCTCTTCATGTACCTGCATCAGTGTCTTTGGCTTCTCAGAACAGCTTCTCTCTGAAGCAAAAGACTGTAACAAGGAGAAATACATGTCTTTCAGCACAACCTCGAACCAATAAGAAGGTTGTTCCAACAACAACTTCTCCAACAACCGGGAGACGACGATCTTGTGCCATATACCCTGGTGTTCGTATGAGGAAATGGGGCAAATGGGCCGCTGAAATCCGCGATCCTTTCAAGAATGCTAGAATCTGGTTGGGAACTTTCAATAGTGCTGAAGAAGCTTCTCAAGCTTATGAATCCAAAAAGCTTCAATTTGAACTTAAATCTCATGCAATGGAGGTAGAAACATACATAAAAAAGGGTTCCGCTTCTGCTGCCCCACCAGTTGCTGCATTGAACAAAAACTATTCAGCAGATGCTCATGCTGCTAATGCTTCTGTGTCAGAGAAATTCTCAACTGCCGAAGACTCTGAGAATTTGTTCTCACACACATCACCTTCTTCCGTGCTTGAGTTGGATACCTTAACATCCAATTCAATTGAGACTGAAGCTGCTGCTGTCACTGCTGTCAATGAAGCAAGTGAAATGGTCTCTTGTCAACTTGAAGAGCTAGAAATTCCAGATATGAGCGTTTTAAACTTGCCTGAGCCAATTACTGCTGAGAATCCAACTGGAACTGATCCCAATTTTGGTTTTGGATTTGATTTTGATCGGTTTAACATCGACGATTTTGGACCGGATTTTGATGAATTTGGTGACTACGGTGACTTAGTTGACTTCATGGATATTCAAATACATGGTTTTGATGACAATGAACCAAGTGAGCTTCCTGATTTTGATTTTGGTGATATCGGTGATGATGATGAATTTGCTGGTTGGATTGAGGAATCCCTTCAACACAATATAGCTTGTGTGTAA 1092 0.4167 MSGSRKSRARQRPNPLKQSKLITRKLQLVYDDPDATDLSEDESQQPRTTTKRSFVEVPLPLHVPASVSLASQNSFSLKQKTVTRRNTCLSAQPRTNKKVVPTTTSPTTGRRRSCAIYPGVRMRKWGKWAAEIRDPFKNARIWLGTFNSAEEASQAYESKKLQFELKSHAMEVETYIKKGSASAAPPVAALNKNYSADAHAANASVSEKFSTAEDSENLFSHTSPSSVLELDTLTSNSIETEAAAVTAVNEASEMVSCQLEELEIPDMSVLNLPEPITAENPTGTDPNFGFGFDFDRFNIDDFGPDFDEFGDYGDLVDFMDIQIHGFDDNEPSELPDFDFGDIGDDDEFAGWIEESLQHNIACV* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0712 363 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Mtr8g0712 363 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Mtr8g0712 363 Gene3D AP2/ERF domain 116 171 IPR036955 GO:0003700|GO:0006355
Mtr8g0712 363 SMART rav1_2 116 170 IPR001471 GO:0003700|GO:0006355
Mtr8g0712 363 MobiDBLite consensus disorder prediction 1 21 - -
Mtr8g0712 363 MobiDBLite consensus disorder prediction 1 53 - -
Mtr8g0712 363 Pfam AP2 domain 117 158 IPR001471 GO:0003700|GO:0006355
Mtr8g0712 363 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Mtr8g0712 363 SUPERFAMILY DNA-binding domain 116 163 IPR016177 GO:0003677
Mtr8g0712 363 CDD AP2 115 156 IPR001471 GO:0003700|GO:0006355
Mtr8g0712 363 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 9 362 - -
Mtr8g0712 363 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 9 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0712 Mtr-Chr8 8568527 8570744 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0712 1 362 AP2-EREBP Transcription Factor Family AT1G68550 30.628 9.94e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr8g0712 AP2 1.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0712 - - mtr:MTR_1g105400 420.624