Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0709 ATGTCGGGTTCTAGAAAATCTAGAGCTAGACAAAGGCCTAACCCTTTGAAAGAATCCAAATTGATGACAAGGAAATTGCAGCTTGTTTTTGATGATCCTGATGCCACTGATGTATCTGAAGACGAGTCACAACAATCACGAACAACAACTAAAAGAAGCTTCTTCGAGGTCACTCTCCCTCCTCGTGCACCCGCAGCATTATCTTTGACTTCTCAGAACAGCTTCTATGTGAAGCCAAAGACTGTAACAAGGAGAAAGACATGTCTTTCAGTACAACCTCAGACCAACAAGAAGGTTGTTCAAACATCAACTTCTCCAACCACAGGGAGACGATCTTGTGCCAAATACCGCGGTGTTCGTATGAGGCCATGGGGCAAATGGGCTGCTGAGATTCGTGATCCTTTCAGAAATGTTAGAATCTGGTTGGGAACTTACAACAGTGCTGAAGAAGCTTCTCAAGCTTATGAATCCAAAAGGCTTCATTTTGAGCTTAAATTTCAGGCAATGGAGGCAATCAAAAAGGGCTCCGCTTCTGCAGCAGCCCCTCGACTTGCTGCATTGAACAAAAACTCTTATGCAGATGTTGATGCTGCTAATGCTTCTGTGTCGGAGAAATTCTCAACTACTGAAGACTCTGACAGTTTGTTCTCACACACATCGCCTTCTTCCGTGCTTGAGTTAGATACCTTAGCATCCAGTTTGATTGAGAAGTTTGATGTTCCATCAAACACTGAAGTTGTTGCTGTCTATGAACCGAGTGACATGGTGGTTTGTCAACTTGAAGAGCTAGATATTCCGGATATGAGTGTTTTAAACTTGCCTGAGCCAACTGCTGCTGAGATTCCAATTGGGACTGATCCCAATCTTTGTTCTGGATTTGATTTTGATCGGTTTAACATTGACGATTTTGGACCGGATTTTGATGAATTTGGTGATTTCGATGACTTAGGTGACTTCAAGGATATTCAAATACATGGTTTTGATGACAATGAACCTAGCGAGCTTCCTGATTTTGATTTTGGCGATATTGGTGTTGATGATGATGAATTTGCTGGTTGGATTGAGGAACCCCTCCAACACAACATACCTTGTGTCTAA 1098 0.4244 MSGSRKSRARQRPNPLKESKLMTRKLQLVFDDPDATDVSEDESQQSRTTTKRSFFEVTLPPRAPAALSLTSQNSFYVKPKTVTRRKTCLSVQPQTNKKVVQTSTSPTTGRRSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAEEASQAYESKRLHFELKFQAMEAIKKGSASAAAPRLAALNKNSYADVDAANASVSEKFSTTEDSDSLFSHTSPSSVLELDTLASSLIEKFDVPSNTEVVAVYEPSDMVVCQLEELDIPDMSVLNLPEPTAAEIPIGTDPNLCSGFDFDRFNIDDFGPDFDEFGDFDDLGDFKDIQIHGFDDNEPSELPDFDFGDIGVDDDEFAGWIEEPLQHNIPCV* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0709 365 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Mtr8g0709 365 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Mtr8g0709 365 ProSiteProfiles AP2/ERF domain profile. 115 172 IPR001471 GO:0003700|GO:0006355
Mtr8g0709 365 SMART rav1_2 115 169 IPR001471 GO:0003700|GO:0006355
Mtr8g0709 365 MobiDBLite consensus disorder prediction 1 52 - -
Mtr8g0709 365 CDD AP2 114 155 IPR001471 GO:0003700|GO:0006355
Mtr8g0709 365 Gene3D AP2/ERF domain 114 169 IPR036955 GO:0003700|GO:0006355
Mtr8g0709 365 SUPERFAMILY DNA-binding domain 115 162 IPR016177 GO:0003677
Mtr8g0709 365 MobiDBLite consensus disorder prediction 11 31 - -
Mtr8g0709 365 Pfam AP2 domain 115 159 IPR001471 GO:0003700|GO:0006355
Mtr8g0709 365 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 6 363 - -
Mtr8g0709 365 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0709 Mtr-Chr8 8552216 8554764 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0709 1 364 AP2-EREBP Transcription Factor Family AT1G68550 28.421 1.88e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr8g0709 AP2 5.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0709 - - mtr:MTR_1g105400 427.172