LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr8g0709	ATGTCGGGTTCTAGAAAATCTAGAGCTAGACAAAGGCCTAACCCTTTGAAAGAATCCAAATTGATGACAAGGAAATTGCAGCTTGTTTTTGATGATCCTGATGCCACTGATGTATCTGAAGACGAGTCACAACAATCACGAACAACAACTAAAAGAAGCTTCTTCGAGGTCACTCTCCCTCCTCGTGCACCCGCAGCATTATCTTTGACTTCTCAGAACAGCTTCTATGTGAAGCCAAAGACTGTAACAAGGAGAAAGACATGTCTTTCAGTACAACCTCAGACCAACAAGAAGGTTGTTCAAACATCAACTTCTCCAACCACAGGGAGACGATCTTGTGCCAAATACCGCGGTGTTCGTATGAGGCCATGGGGCAAATGGGCTGCTGAGATTCGTGATCCTTTCAGAAATGTTAGAATCTGGTTGGGAACTTACAACAGTGCTGAAGAAGCTTCTCAAGCTTATGAATCCAAAAGGCTTCATTTTGAGCTTAAATTTCAGGCAATGGAGGCAATCAAAAAGGGCTCCGCTTCTGCAGCAGCCCCTCGACTTGCTGCATTGAACAAAAACTCTTATGCAGATGTTGATGCTGCTAATGCTTCTGTGTCGGAGAAATTCTCAACTACTGAAGACTCTGACAGTTTGTTCTCACACACATCGCCTTCTTCCGTGCTTGAGTTAGATACCTTAGCATCCAGTTTGATTGAGAAGTTTGATGTTCCATCAAACACTGAAGTTGTTGCTGTCTATGAACCGAGTGACATGGTGGTTTGTCAACTTGAAGAGCTAGATATTCCGGATATGAGTGTTTTAAACTTGCCTGAGCCAACTGCTGCTGAGATTCCAATTGGGACTGATCCCAATCTTTGTTCTGGATTTGATTTTGATCGGTTTAACATTGACGATTTTGGACCGGATTTTGATGAATTTGGTGATTTCGATGACTTAGGTGACTTCAAGGATATTCAAATACATGGTTTTGATGACAATGAACCTAGCGAGCTTCCTGATTTTGATTTTGGCGATATTGGTGTTGATGATGATGAATTTGCTGGTTGGATTGAGGAACCCCTCCAACACAACATACCTTGTGTCTAA	1098	0.4244	MSGSRKSRARQRPNPLKESKLMTRKLQLVFDDPDATDVSEDESQQSRTTTKRSFFEVTLPPRAPAALSLTSQNSFYVKPKTVTRRKTCLSVQPQTNKKVVQTSTSPTTGRRSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAEEASQAYESKRLHFELKFQAMEAIKKGSASAAAPRLAALNKNSYADVDAANASVSEKFSTTEDSDSLFSHTSPSSVLELDTLASSLIEKFDVPSNTEVVAVYEPSDMVVCQLEELDIPDMSVLNLPEPTAAEIPIGTDPNLCSGFDFDRFNIDDFGPDFDEFGDFDDLGDFKDIQIHGFDDNEPSELPDFDFGDIGVDDDEFAGWIEEPLQHNIPCV*	366

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mtr8g0709	365	PRINTS	Ethylene responsive element binding protein signature	116	127	IPR001471	GO:0003700\|GO:0006355
Mtr8g0709	365	PRINTS	Ethylene responsive element binding protein signature	138	154	IPR001471	GO:0003700\|GO:0006355
Mtr8g0709	365	ProSiteProfiles	AP2/ERF domain profile.	115	172	IPR001471	GO:0003700\|GO:0006355
Mtr8g0709	365	SMART	rav1_2	115	169	IPR001471	GO:0003700\|GO:0006355
Mtr8g0709	365	MobiDBLite	consensus disorder prediction	1	52	-	-
Mtr8g0709	365	CDD	AP2	114	155	IPR001471	GO:0003700\|GO:0006355
Mtr8g0709	365	Gene3D	AP2/ERF domain	114	169	IPR036955	GO:0003700\|GO:0006355
Mtr8g0709	365	SUPERFAMILY	DNA-binding domain	115	162	IPR016177	GO:0003677
Mtr8g0709	365	MobiDBLite	consensus disorder prediction	11	31	-	-
Mtr8g0709	365	Pfam	AP2 domain	115	159	IPR001471	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr8g0709	Mtr-Chr8	8552216	8554764	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr8g0709	1	364	AP2-EREBP Transcription Factor Family	AT1G68550	28.421	1.88e-29	114

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mtr8g0709		AP2	5.5e-10	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr8g0709	-		-	mtr:MTR_1g105400	427.172

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