Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0680 ATGTTGCAGTTTCAGCCACAAGGAACTTCTAAACAAACTTGTACTCTTCTCGCTGTTACCTCTGAAACACGTTCTGTTGAACAGAAGCAGTTACAGAATCAGCAGAAGTATCCTTTCCCTGAGCTGGTTTCTTCGGGGCGTCTCGAGGTTCAAACTCTTTGCAATCCGGAAAAGGAACAGTTTCGTAAAGTTCTTGAATCGTGTAAACCAAATTTTGTTTACTTTCAAGGGGAGCAGTTACTGGATGAGGAAGTTGGTTCACTGGTTTGGCAAGGTGGAGAATTCTCCAACCCTGAAGAGATATCAGAGCTCTTCGATACCACATTACCGACGGCTGTTTATTTAGAAATCCCAAATGGAGAAAGTTTTGCAGAGGCCCTTCATCTTAAGGGAATCCCATATGTTGTATTTTGGAAAAATGCCTTTTCTCAATATGCTGCCTGCCATTTCCGTCAAGCATTATTTTCAGTGGTGCAGAGTTCATCTACACACACATGGGATGCTTTCCACCTTGCACGTGCCTCTTTTGAACTTTACTGTGTTCAAAATAATCAAGTACTTCCTACTGATAGCAATGATGCTGATAGCGATATGGGGCCACACCTTCTTGGCGAGTGTCTAAAAATCAATGTTGACCCTCCAGAGATGGATGAAGAAGATGATGATGAAGAAAGTTCCTCAGGCAGTCTTCCTTCTATTCAGATACATGATGATGAAGTGAACTTGAGATTTCTCATCTGTGGTGCTCCTTCCACTGTTGATGAGTCATTGCTGAGATCTTTGGAGGATGGACTCAGAGCTCTCTTAACTATTGAAATGCGTAGTTGCAAGCTCCATGGCAAGTATAGTGCCCCTCCACCACCACTTCAGGCAGCTTCTTTTTCTCGCGGAGTTGTGACCATGCGATGTGATATATCAACCTGCAGTTCTGCACATATCTCACTTCTAGTATCTGGCAGTCCACAAGCCTGTTTTAATGATCAGCTTTTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAGTCAAATAGTTCATGCACGACTCAACGGTGAAGCAAACACACAGATTATCTCTGAACCTCGCAGATCTGCTTCAATAGCTTGTGGAGCAACTATATTTGAAGTTAGCATGAAGCTTCCTCAATGGGCTTTGCAGATTTTGCGACAGCTAGCACCTGATGTTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTATTCAAGGGTTGCCTGTAGCCTCTTTTGAGAAAGATGATGCGGAGCGCTTACTTTTCTTCTATCAAAGCTCTGCGAAAGATGGATGTGATAACGGCAATATAGTTTTCAGCAGGCCCCCCGTTTGGTTGAAGCCTCCCCCTCCTACAAGAAAGAGGTGTGAATCAAGCCAAGGGGCTAGCCCTGACATCCACAATGATGAAGAGGAAAAGGATAGGAAAATGGTGAATGGGATTAGCACACCATTAACTCCAGCTAGGCAGAGATTAAAAGTATCAGCAATGAGGCCAATTCCTCATGTTCGACGCCATAGAATGACACCTTTTAGTGGACCTTCTGGCGTAAATGGCTTTGGTGGTCCCCATGTTGAGGCTTATGTGCCACTTGTCCCTGTGAAGCGCAGTAGTATTGGATCATCATCTGCAACACAGAGAAAATCTTTTTCAAGCTCATCTCAACCTAAGCAGGTTATTTCATTGAATCCATTACCGTTGAAGAAACATGGCTGTAGCAGAGGCTCGGTACAGACTTGCTCTGAGGAGGAATTTATTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGGCATAGCCGACTGATTCCCCAAGGTGGGCTTGCCGAGTTCCCTGATGCCATTCTAAATGGAAAACGCCTTGATCTCTACAACTTATATAAAGAGGTGGTTACAAGGGGAGGATTTCACGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTTTCAAAAATGGGAAATTACACATCAACAAATAGAATGACTGGAGTTGGAAATACACTCAAGAGACATTATGAAACCTACCTTTTAGAATATGAACTAGCTCATGATGATGTGGATGGAGAATGCTGCTTGCTGTGTCACAGTAGTGCTGCTGGGGATTGGGTGAATTGTGGCATATGTGGTGAGTGGGCCCACTTCGGCTGTGACAGAAGGCAGGGTCTTGGCGCATTTAAGGATTATGCAAAAACAGATGGGCTGGAATATATATGTCCTCATTGTAGTGTTACGAATTTCAAGAAAAAACAAAGTGTTGCAAATGGGTATTCTCAAAGGTCAATGTCGTCACGACTCCTTTGA 2310 0.4342 MLQFQPQGTSKQTCTLLAVTSETRSVEQKQLQNQQKYPFPELVSSGRLEVQTLCNPEKEQFRKVLESCKPNFVYFQGEQLLDEEVGSLVWQGGEFSNPEEISELFDTTLPTAVYLEIPNGESFAEALHLKGIPYVVFWKNAFSQYAACHFRQALFSVVQSSSTHTWDAFHLARASFELYCVQNNQVLPTDSNDADSDMGPHLLGECLKINVDPPEMDEEDDDEESSSGSLPSIQIHDDEVNLRFLICGAPSTVDESLLRSLEDGLRALLTIEMRSCKLHGKYSAPPPPLQAASFSRGVVTMRCDISTCSSAHISLLVSGSPQACFNDQLLENHIKNEIIEKSQIVHARLNGEANTQIISEPRRSASIACGATIFEVSMKLPQWALQILRQLAPDVSYRSLVALGIASIQGLPVASFEKDDAERLLFFYQSSAKDGCDNGNIVFSRPPVWLKPPPPTRKRCESSQGASPDIHNDEEEKDRKMVNGISTPLTPARQRLKVSAMRPIPHVRRHRMTPFSGPSGVNGFGGPHVEAYVPLVPVKRSSIGSSSATQRKSFSSSSQPKQVISLNPLPLKKHGCSRGSVQTCSEEEFIKDVMEFLILRGHSRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMGNYTSTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQSVANGYSQRSMSSRLL* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0680 769 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 759 - -
Mtr8g0680 769 SMART ARID_2 580 683 - -
Mtr8g0680 769 Pfam ARID/BRIGHT DNA binding domain 586 683 IPR001606 GO:0003677
Mtr8g0680 769 MobiDBLite consensus disorder prediction 212 232 - -
Mtr8g0680 769 CDD ARID 585 683 - -
Mtr8g0680 769 Gene3D - 578 686 IPR036431 GO:0003677
Mtr8g0680 769 SUPERFAMILY FYVE/PHD zinc finger 679 747 IPR011011 -
Mtr8g0680 769 MobiDBLite consensus disorder prediction 452 481 - -
Mtr8g0680 769 CDD PHD_ARID4_like 693 744 - -
Mtr8g0680 769 SMART bright_3 584 688 IPR001606 GO:0003677
Mtr8g0680 769 ProSiteProfiles ARID domain profile. 583 687 IPR001606 GO:0003677
Mtr8g0680 769 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 759 IPR042293 -
Mtr8g0680 769 SUPERFAMILY ARID-like 583 698 IPR036431 GO:0003677
Mtr8g0680 769 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 687 750 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0680 Mtr-Chr8 8136588 8146253 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0680 4 758 ARID Transcription Factor Family AT3G43240 61.417 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mtr8g0680 ARID 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0680 - - cam:101514085 1374.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0680 8 8136588 8146253 Mtr8g0680 8 8136588 8146253 ECH