Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0679 ATGGCTTCTTCAAACGGAAACAACACATCAACAAAAAGCAACAACAAACGTAAGAGATCAACCATTAAAATCAAGAAAGCAGAACAATCAAACAAGCCCCTCGATACCTTCTCAAAACGCAAACTAGGGCTCTTCAACAAAGTTACAGAACTATCTATCCTATGCAATGCAAAAACTGCAATGATCATCACTTCACCAAACGGAAAACTCTACGTTTGTGGTTACCCTAACCCTAACACCGTCATTAAACACTTTCTCGATAGGGAAAACCCAGTCATCGACGCTGACAAAAGGAAGCAGGATCATGAGGGCGTAGTTGAAACCTTAAGGTTTCAACATGAGGCAATTGAAGAACGGCTGAAAGAAGAGAATAATTATTTAGAAGGTGTAAAAGAGAGAAACAAGAGTAGTTCATGTTTTTCTTGCTGGTGGGGTCATTCTATTGATGATATGGCTTTGGAATCTCTTGAGCAATTTAAGACTTCTTTGGTAAAATTGAAGCTTAATTTAGATGCATCCTTGCAAGGCAAAAATATTCATATAACTACTCAATCTTGA 558 0.3781 MASSNGNNTSTKSNNKRKRSTIKIKKAEQSNKPLDTFSKRKLGLFNKVTELSILCNAKTAMIITSPNGKLYVCGYPNPNTVIKHFLDRENPVIDADKRKQDHEGVVETLRFQHEAIEERLKEENNYLEGVKERNKSSSCFSCWWGHSIDDMALESLEQFKTSLVKLKLNLDASLQGKNIHITTQS* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0679 185 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 10 182 - -
Mtr8g0679 185 Gene3D - 36 111 IPR036879 GO:0003677|GO:0046983
Mtr8g0679 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 36 72 IPR002100 GO:0003677|GO:0046983
Mtr8g0679 185 MobiDBLite consensus disorder prediction 1 15 - -
Mtr8g0679 185 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Mtr8g0679 185 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Mtr8g0679 185 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Mtr8g0679 185 MobiDBLite consensus disorder prediction 1 21 - -
Mtr8g0679 185 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Mtr8g0679 185 PANTHER MADS BOX PROTEIN 10 182 - -
Mtr8g0679 185 SUPERFAMILY SRF-like 18 88 IPR036879 GO:0003677|GO:0046983
Mtr8g0679 185 Coils Coil 113 133 - -
Mtr8g0679 185 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0679 Mtr-Chr8 8132420 8132977 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0679 12 167 Type I MADS-box Gene Family AT5G60440 31.056 1.39e-17 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr8g0679 SRF-TF 8.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0679 - - cam:101507050 184.111