Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0677 ATGTGTGGTGGAGCTATTATCTCCGACTTCATTCCAGCTGCGGCGGCGGTGGGTGGTTCCCGCCGTGTCACAGCGGATATCCTCTGGCCGAATTTGAGGAGGAAACCAAGTTCAAGGAAACCTTTTTTGCTTGACGATGATTTCGAGGCTGGGTTCAGAGAGTTTAAGGATGATTCTGATTTTGATGAAGACGAGGATGAAGATGATGATGAAGGGTTGTTGGTCGGTGTCAAAGGTTTCACCTTTGCTTCCAATAAGAACAACAAATCTTCTAAGTCCTTTGTTCGTGGATCAAGTGCTGCAAAATCTGTTGCTTTGAATTCAAACCAGCAAGCTGAAAAGGATTCGAAGAGAAAGAGAAAGAATCAGTATAGGGGTATCCGTCAACGTCCATGGGGAAAATGGGCAGCTGAGATCCGTGACCCAAGGAAAGGAGTCCGTGTCTGGCTCGGAACTTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCTAGGAGAATCCGTGGCAATAAAGCCAAGGTGAATTTCCCTGAAGAGGCTCCGGTTGCTTCCTCAAAACGTCTCAAGAAAAATCCTGAGATGCAGCTGTTGAATGATAATCTAAACTCTTTCAAGCCGAACGGAAACCAAATGTTCAATTTCAGTGAAAATATGGAGAACTACTATTCTCCTATGGATCAGGTGGAACAGAAACCATTGGTTAACAACCAATATGCTGACATCGGAGCCTTCTCCGGAAACGGAGTGCAGCTTACATCTGCTGATGTTAATGCTTATTTCAGTTCAGAGCATTCAAGCAATTCATTTGATTATTCTGATCTATGTTGGGGTGAACAAGGCGCAAAAACACCTGAGATTTCGTCTGTGTTTTCTGCTGCTGCTCCTATGGAAGGTGAATCTCAGAAGAACATGCTGTCTGACAACACTCAGGATATGCTGCCTATGCAAAATGATTCTGCAAAGACCCTCTCTGAAGAGCTCGCAGATATCGAATCCCAGCTGAAGTTCTTCGAGAACGATAACTGGAGTGATGCTTCATTGGCTGCTTTGCTTAGTGGAGATACAACTCAGGATGGTGGAAACACAATGAACCTTTGGAACTTCGATGACCTGCCTTCCATCGCAGGCGGAGTTTTCTAA 1149 0.45 MCGGAIISDFIPAAAAVGGSRRVTADILWPNLRRKPSSRKPFLLDDDFEAGFREFKDDSDFDEDEDEDDDEGLLVGVKGFTFASNKNNKSSKSFVRGSSAAKSVALNSNQQAEKDSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGNKAKVNFPEEAPVASSKRLKKNPEMQLLNDNLNSFKPNGNQMFNFSENMENYYSPMDQVEQKPLVNNQYADIGAFSGNGVQLTSADVNAYFSSEHSSNSFDYSDLCWGEQGAKTPEISSVFSAAAPMEGESQKNMLSDNTQDMLPMQNDSAKTLSEELADIESQLKFFENDNWSDASLAALLSGDTTQDGGNTMNLWNFDDLPSIAGGVF* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0677 382 PANTHER DNA-BINDING DOMAIN 1 376 IPR044808 GO:0003700|GO:0009873
Mtr8g0677 382 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
Mtr8g0677 382 PANTHER EREBP TRANSCRIPTION FACTOR 1 376 - -
Mtr8g0677 382 Gene3D AP2/ERF domain 122 182 IPR036955 GO:0003700|GO:0006355
Mtr8g0677 382 Coils Coil 323 343 - -
Mtr8g0677 382 CDD AP2 123 181 IPR001471 GO:0003700|GO:0006355
Mtr8g0677 382 MobiDBLite consensus disorder prediction 105 127 - -
Mtr8g0677 382 SUPERFAMILY DNA-binding domain 123 181 IPR016177 GO:0003677
Mtr8g0677 382 Pfam AP2 domain 123 172 IPR001471 GO:0003700|GO:0006355
Mtr8g0677 382 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Mtr8g0677 382 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Mtr8g0677 382 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0677 Mtr-Chr8 8075675 8078746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0677 1 382 AP2-EREBP Transcription Factor Family AT3G14230 42.927 3.31e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr8g0677 AP2 8.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0677 K09286 - gmx:100818646 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0677 8 8075675 8078746 Mtr8g0677 8 8075675 8078746 ECH