Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0658 ATGGCAACCAAACAAGATTCACCAATGGAGCTTCACGAAATCATCACAGAATCTGAAGGATCCGATCCATATTCAGAATGCGACGATTCAGAAGAAGATCCTGATTTCGACATGCTTGAAGAAACCCATCGTAGCTTCTCCAATCTCTCAATCAAGAACAAGGCGAAAAAGCGCATAGTTGATGATAAGGGTCTGGCTGGTATTGAGATGAATTCAAAAGTGTTGGAGATGAATGCACCTTCTCTTGATGACGATGGTTTTGAAAAGGTTCAGAAAATAATTAAGGCTGGACTCGTAGAGAAATTGAAAGTGGATGAATGCAAGATGTATTTGAAGAAGAGTGGTCTGAGGCTAACTGGGAATAAGGACACACTTATCCAGCGTATAAAGGAGCATCAAGAGATTATAAATGGTGGAGGGGAGAATAAGTACCCGCCTCATAGCTTTGTGTTGAATTGCAAAGGTGATGCATGCACCGGTGATGTTGTTTTGTTTGAGCAAAATGTTTATGAAATGTTCAACATAGCATCCAGGAGTGGCGGCGGTCCACCGTGTGGCAAAAGGATTGTTGCAGGCAGCATAGTGAAAGAAAGCTATGGTGCTGCTAAACAACAGCATACATTTACTATTGAAGTGCTGTGGAGCAAGGGAGAAAAGCCTCTCCCTCCCCTTCACCCCTTACTGATTAAGGGTCGAAACCTTTATCGGTTGAAGACTTTGAGACAGAAATGGGAAGATGAAGGGAAAAGGCAAAAACTGTTAATGGAAAAACACTCGCGAGGATCCGTTGCTAGGGCAGACAGGGAAGCAAGGATACAGGAAAAGGAGATGAGAAAATCAATGAAGGAAAATAGGATCTCCAAAAAGGATTCAGCAAAGAACCAATTCCAATCACATTCAACCATGGCAAGGTCACAAAATCAACCTCAAGAAACAACAACTGTATTCATTAATCCAAAAAAAACCGAATTTCCATCCCAACACTCAGCTTTATCAACACCGGCAATTGTAAATAAACCAGCAGCTGTAACTGAACAGCGTGTTCAGCCTACATATTCTCGAACTGTCGTAATGGGATCAGACCAGCTCAGAAATTCAGGAAAATCATCTTTTATCGCAAACAACTATTATGCTGACTACCATTACAGAGACAACCCAACTAGTACTGCTGAGAGATACAATGCTTTCATTGCTGAGACAAACAGGAGAGCTTCTTACCAAAGGAAGCCTTTGACAAGTGCAAATCACTTTGTTCCACGTTCGGCAAATGCAAACCACTTTGTTCCACGTTCAGAAAATGCAAATCACATGCATACATCGATCTCAAATAGAGAAAGCTATCAGCAAAAACAGTTTTGTAGACATTTTGCTCGTGGAAGGTGCCATTATGGAGATAACTGCAAATTCTTACATGGTTCGAGAGATTAA 1428 0.4139 MATKQDSPMELHEIITESEGSDPYSECDDSEEDPDFDMLEETHRSFSNLSIKNKAKKRIVDDKGLAGIEMNSKVLEMNAPSLDDDGFEKVQKIIKAGLVEKLKVDECKMYLKKSGLRLTGNKDTLIQRIKEHQEIINGGGENKYPPHSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSGGGPPCGKRIVAGSIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLHPLLIKGRNLYRLKTLRQKWEDEGKRQKLLMEKHSRGSVARADREARIQEKEMRKSMKENRISKKDSAKNQFQSHSTMARSQNQPQETTTVFINPKKTEFPSQHSALSTPAIVNKPAAVTEQRVQPTYSRTVVMGSDQLRNSGKSSFIANNYYADYHYRDNPTSTAERYNAFIAETNRRASYQRKPLTSANHFVPRSANANHFVPRSENANHMHTSISNRESYQQKQFCRHFARGRCHYGDNCKFLHGSRD* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0658 475 MobiDBLite consensus disorder prediction 276 311 - -
Mtr8g0658 475 MobiDBLite consensus disorder prediction 1 35 - -
Mtr8g0658 475 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE 1 474 - -
Mtr8g0658 475 Coils Coil 263 283 - -
Mtr8g0658 475 SMART c3hfinal6 448 473 IPR000571 GO:0046872
Mtr8g0658 475 SUPERFAMILY SAP domain 89 133 IPR036361 -
Mtr8g0658 475 MobiDBLite consensus disorder prediction 293 311 - -
Mtr8g0658 475 Gene3D SAP domain 91 145 IPR036361 -
Mtr8g0658 475 SMART sap_9 99 133 IPR003034 -
Mtr8g0658 475 Gene3D - 435 475 - -
Mtr8g0658 475 SUPERFAMILY CCCH zinc finger 448 472 IPR036855 GO:0046872
Mtr8g0658 475 Pfam SAP domain 100 132 IPR003034 -
Mtr8g0658 475 ProSiteProfiles Zinc finger C3H1-type profile. 447 474 IPR000571 GO:0046872
Mtr8g0658 475 ProSiteProfiles SAP motif profile. 99 133 IPR003034 -
Mtr8g0658 475 Pfam CCCH-type zinc finger 453 472 IPR041367 -
Mtr8g0658 475 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 1 474 IPR045124 GO:0003723|GO:0045892
Mtr8g0658 475 MobiDBLite consensus disorder prediction 276 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0658 Mtr-Chr8 7813295 7821704 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr8g0658 SAP 3.4e-07 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0658 - - gmx:100815642 552.362