Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0648 ATGCAGAATCATAGGCTGATGAAGCAACAGCAACATCAGCATCAACAACAACAACAAGCTATGATGCAACAAGCTGCTCTTCTTCAACAACAGTCTCTCTATCACCCTGGTCTCTTAGCTCCACCTCAGATTGAACCAATCCCAAGTGGAAATTTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGCAACGTCCATACACAAGTAACCGAGCCACTTCTGCAAGAAGTTTTTGCGGGTACTGGCCCAGTTGAAGGGTGTAAACTTTTTAGGAAAGAGAAGTCATCCTATGGATTCATTCATTACTTCGATCGCAGATCTGCTGCTCTGGCCATATTAACTCTCAATGGAAGGCATCTATTCGGGCAACCTATCAAAGTTAACTGGGCATATGCCAGTGGTCAGAGAGAGGATACATCAGGCCATTACAACATATTTGTTGGTGACCTCAGTCCTGAGGTTACCGATGCTACACTTTTCGCATGCTTTTCTGTCTACCAAAGTTGTTCAGATGCAAGAGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAGCCAGCAGGATGCTCAAAGTGCTATAAATGATTTGACCGGTAAGTGGCTTGGAAGTAGACAAATACGCTGCAACTGGGCAACAAAAGGTGCTGGCGGCATTGAAGAGAAGCAAAACTCAGACAGTAAAAGTGTGGTGGAACTAACAAATGGTTCATCTGAGGATGGTAAAGAGATATCTAGCAATGATGTTCCTGAGAACAATCCTCAATATACAACTGTTTATGTCGGTAACCTTGGATCGGAGGCAACACAGCTTGATCTCCATCGTCATTTCCATGCCCTTGGGGCTGGTGTGATAGAGGAAGTTCGTGTCCAGCGTGATAAAGGATTTGGGTTTGTGAGATATAGTACTCATGCTGAAGCAGCTCTGGCAATTCAGATGGGAAATGCCCAGTCTTATCTCTGTGGCAAAATTATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCTCTTCCACCACCTGCTGCTGCGCCTCTGCCAGGCCTATCTGCAACCGATATTTTGGCATACGAGCGGCAGCTAGCAATGAGCAAGATGGGTGGAGTTCATGCTGCGTTGATGCATCCCCAAGCACAGCATCCTCTTAAGCAGGCTGCAATTGGAGCAAGCCAGGCGATATACGACGGCGGGTTCCAAAATGTTGCTGCTGCACAGCAAATGATGTATTATCAGTAA 1284 0.465 MQNHRLMKQQQHQHQQQQQAMMQQAALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSKPTPPGTASNPLPPPAAAPLPGLSATDILAYERQLAMSKMGGVHAALMHPQAQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0648 427 SUPERFAMILY RNA-binding domain, RBD 141 232 IPR035979 GO:0003676
Mtr8g0648 427 MobiDBLite consensus disorder prediction 231 263 - -
Mtr8g0648 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 147 225 IPR000504 GO:0003723
Mtr8g0648 427 CDD RRM3_TIA1_like 268 343 - -
Mtr8g0648 427 SMART rrm1_1 269 339 IPR000504 GO:0003723
Mtr8g0648 427 SMART rrm1_1 148 221 IPR000504 GO:0003723
Mtr8g0648 427 SMART rrm1_1 63 132 IPR000504 GO:0003723
Mtr8g0648 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 149 219 IPR000504 GO:0003723
Mtr8g0648 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 327 IPR000504 GO:0003723
Mtr8g0648 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 130 IPR000504 GO:0003723
Mtr8g0648 427 CDD RRM1_TIA1_like 64 134 - -
Mtr8g0648 427 Gene3D - 146 227 IPR012677 -
Mtr8g0648 427 Gene3D - 245 347 IPR012677 -
Mtr8g0648 427 SUPERFAMILY RNA-binding domain, RBD 46 140 IPR035979 GO:0003676
Mtr8g0648 427 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 11 408 - -
Mtr8g0648 427 Gene3D - 1 145 IPR012677 -
Mtr8g0648 427 MobiDBLite consensus disorder prediction 1 22 - -
Mtr8g0648 427 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 11 408 - -
Mtr8g0648 427 MobiDBLite consensus disorder prediction 229 263 - -
Mtr8g0648 427 SUPERFAMILY RNA-binding domain, RBD 257 350 IPR035979 GO:0003676
Mtr8g0648 427 CDD RRM2_PUB1 148 222 - -
Mtr8g0648 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 136 IPR000504 GO:0003723
Mtr8g0648 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 343 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0648 Mtr-Chr8 7654015 7659665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0648 57 344 Eukaryotic Initiation Factors Gene Family AT4G34110 28.383 1.80e-21 95.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0648 8 7654015 7659665 Mtr8g0648 8 7654015 7659665 ECH