Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0620 ATGTCCTCACAAGAGCAAGCACTGGTCTCTCTCCTTTCCCAACTCGCCCTATCTTTCGACGGCGCCGTTTTAGGTTTCGCCGTCGCTTACGTCGCCGTTCGCTCCATCCGCAAATTCACCCTTACCTCCGCCGCTCTTCGCAAAATCACCGCCGCTCCTTCCGTCTCCGTCTCCGACCTCCGCTCGCTCCTCACCGAAACCGATGAAAACTCCGATGAAGGAAAAATTGTAATTGTTCGTGGTACTGTTGATGCAAAGAACGTTGTTGATGGTAGTTGGAAAGCGTTGTGGCCTGGTGTTTTGGTTTCGAGTGAGTCCGGGGATAAAGGTGTTGTTCTTCAACGAACTCAAACGTGTATATACAATGAATGGAAGGGCTTATTTGGGTGGACTTCGGATCTTCGAGCCCTATTTCTAAGATCTTGGAGACAACAGGAGTCCACATCCTTAAGAAAGATCCCTTTTGTTCTCATTGATGTTGGACGGCCGTCAAATCCCGAATATGTTGTTGTCAACATGGATGGATCGAGTCATCCTTTACCTCTTACAACAGTTTACCATAGATTGCAACCCGTAAATCCTCCTCCTTATACTTTCTTGCAAGCACTTTTTGGGCATGAATATCCGGTTGGACTGCTTGACGAAGAGAAAATTCTTCCCTTGGGAAAGGATGTCAGTGCTGTAGGCCTTTGCAGTTTAAGAAATGGAATTGCTGAAATCAAGGCTTGCAATGATCTTCCATATTATCTGTCTGACTTGAGTAAAGATCAGATGATTGTAGATCTTTCCTTCAAAACTAAATTACTGTTTTGGAGTGGTATTCTTCTTGGTTCAATGTCAGTTGGGATCATCGGCTATGCCGTCGTGAGGAACTGGAATAAATGGAAACAATGGAAGCAACAAAGGCAGCTCCAGCAACGAAGGCAACAACCCATTGAACCTGTTCCTCCAACAGATGATGAGATTGAAGATGTTCCAGATGGACAATTATGCGTCATATGTCTGATGAGGAGAAGGCGCTCTGTTTTTATTCCATGTGGGCATCTTGTATGTTGCCAAGGGTGTGCCATTTCAGTTGAAAGTGAAGTGGCACCCAAGTGTCCAGTTTGTCGTCAGGAGGTCCGGGATTCAGTGCGAATTTTCGAATCTTGA 1152 0.4575 MSSQEQALVSLLSQLALSFDGAVLGFAVAYVAVRSIRKFTLTSAALRKITAAPSVSVSDLRSLLTETDENSDEGKIVIVRGTVDAKNVVDGSWKALWPGVLVSSESGDKGVVLQRTQTCIYNEWKGLFGWTSDLRALFLRSWRQQESTSLRKIPFVLIDVGRPSNPEYVVVNMDGSSHPLPLTTVYHRLQPVNPPPYTFLQALFGHEYPVGLLDEEKILPLGKDVSAVGLCSLRNGIAEIKACNDLPYYLSDLSKDQMIVDLSFKTKLLFWSGILLGSMSVGIIGYAVVRNWNKWKQWKQQRQLQQRRQQPIEPVPPTDDEIEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVESEVAPKCPVCRQEVRDSVRIFES* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0620 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 383 IPR044247 GO:0004842
Mtr8g0620 383 Pfam Zinc finger, C3HC4 type (RING finger) 329 376 - -
Mtr8g0620 383 Pfam E3 Ubiquitin ligase 138 282 IPR022170 GO:0004842|GO:0006996|GO:0016567
Mtr8g0620 383 SMART ring_2 331 370 IPR001841 -
Mtr8g0620 383 SUPERFAMILY RING/U-box 321 376 - -
Mtr8g0620 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 383 - -
Mtr8g0620 383 ProSiteProfiles Zinc finger RING-type profile. 331 371 IPR001841 -
Mtr8g0620 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 383 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0620 328 380 C3H Transcription Factor Family AT3G06140 35.849 5.19e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0620 K15688 - gmx:100800058 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0620 8 7304742 7310385 Mtr8g0620 8 7304742 7310385 ECH