Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0600 ATGAGTAACTGGTTAGGATTTTCTCTCACTCCACACTTGAGGATTGATGAAGAATTTGGTACAGAAAACCAAAACCAAAACCAAAACCATGTAGCTGAAGGATCAGAAATAGGAAGAAACTATGTTACTCCTTCTTCTCATCCTCATCCTCATCATTTATCTATTATGCCTCTACGTTCTGATGGTTCACTTTGTGTTTCTGATTCCTTTACTCCTCAAGAATGGAGATATGAGAATGCAATAACTGATGGAAATTCAAATGAAGAAGGACCAAAACTTGAAGATTTTTTGGGATGTTACTCAAACCAAAACCAGAATAGTACTACTACTAGTACTATGTCTAAAATTAATGTTAATGTGTCACCAAGTTTTTGTACCAATAATAATCCAGAGATTGACACAAGGGAGAATCTAACAAACCAATCTTTGATTCACTCTTTTCATGCATATAATGATCACAGCAACAACAATCATCATGCTTTAATCCATGATAATAGCATGTATAAATCTTGGATGACTCAAACTCAGTTTTCTTCTGAGGGGAAAACAACTTCTAGTGATGGAAATGGTTTTCAATCTCTTAATTTGACTATGAGTCCTTGTGTGCAAAATGGTGTTGGTGGGGGTGTTGGTAGTGCAATTTCTAATGTTCAAGTGAATGAAGATCCTAGGAAAAGGTCTTTGTCAAAATCTAATGCTAGAGAACCTGTTCCTCGTAAATCTATTGATACTTTTGGACAAAGAACTTCTCAATACCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAAGCACATTTATGGGATAATAGTTGCAGAAAAGAAGGGCAAACAAGGAAAGGAAGGCAAGTTTACCTTGGTGGGTATGATAAGGAAGAAAAAGCAGCAAAGGCTTATGACTTAGCTGCACTGAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGATAAGGAACTTGAAGAAATGAAGCACATGACTCGGCAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGTGCGTCTGTGTATAGAGGTGTGACAAGACACCATCAACATGGAAGGTGGCAGGCTCGGATTGGAAGGGTTGCAGGAAACAAGGACTTGTATCTTGGTACATTTAGCACGCAAGAAGAGGCTGCAGAAGCATATGATATTGCAGCAATCAAGTTTAGGGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTCAAGAGAATATGCTCAAGTTCAACTCTAATTACCGGAGATCTCGCAAAACGTTCTCCTAAAGACTCCACCCCTCCCGCAACCACAGCCGAGGACTTCAATTCATGTGGAAGTTCATCGACACTTTCTCAGCCGCCTCCTCTGACTATTACTGATGGTGAACAACATTCTGATGAATTGTCCAACATGGTGTGGAATTCCAACAACGACGAGCAAAAACCTCAGAACGGCACCAACATCACCGAATCATCACAGCACGGTTCACCAAGCAACAAGAATGAGATGAACCCTCAAAGTCCCAAATGTTCATTGGGACTACCTAATGAGTTTGGAGTGAGTGGAGCAGATTATGGACATGGTTACTTCACACTGCATGGACCAAAATTTGATGATGGAAGCAATGAAAATGACCACATGAACAACAATAGGCTTGGAAATTTGGGTTTGGTTAATCAAGTTCCTATGTTTGCTTTGTGGAATGAATGA 1734 0.3968 MSNWLGFSLTPHLRIDEEFGTENQNQNQNHVAEGSEIGRNYVTPSSHPHPHHLSIMPLRSDGSLCVSDSFTPQEWRYENAITDGNSNEEGPKLEDFLGCYSNQNQNSTTTSTMSKINVNVSPSFCTNNNPEIDTRENLTNQSLIHSFHAYNDHSNNNHHALIHDNSMYKSWMTQTQFSSEGKTTSSDGNGFQSLNLTMSPCVQNGVGGGVGSAISNVQVNEDPRKRSLSKSNAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAAKAYDLAALKYWGPTTHINFPLSTYDKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLITGDLAKRSPKDSTPPATTAEDFNSCGSSSTLSQPPPLTITDGEQHSDELSNMVWNSNNDEQKPQNGTNITESSQHGSPSNKNEMNPQSPKCSLGLPNEFGVSGADYGHGYFTLHGPKFDDGSNENDHMNNNRLGNLGLVNQVPMFALWNE* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0600 577 ProSiteProfiles AP2/ERF domain profile. 251 317 IPR001471 GO:0003700|GO:0006355
Mtr8g0600 577 CDD AP2 352 413 IPR001471 GO:0003700|GO:0006355
Mtr8g0600 577 SUPERFAMILY DNA-binding domain 352 413 IPR016177 GO:0003677
Mtr8g0600 577 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 509 - -
Mtr8g0600 577 SUPERFAMILY DNA-binding domain 250 319 IPR016177 GO:0003677
Mtr8g0600 577 MobiDBLite consensus disorder prediction 223 237 - -
Mtr8g0600 577 ProSiteProfiles AP2/ERF domain profile. 353 411 IPR001471 GO:0003700|GO:0006355
Mtr8g0600 577 MobiDBLite consensus disorder prediction 213 238 - -
Mtr8g0600 577 CDD AP2 250 319 IPR001471 GO:0003700|GO:0006355
Mtr8g0600 577 SMART rav1_2 251 323 IPR001471 GO:0003700|GO:0006355
Mtr8g0600 577 SMART rav1_2 353 417 IPR001471 GO:0003700|GO:0006355
Mtr8g0600 577 MobiDBLite consensus disorder prediction 438 519 - -
Mtr8g0600 577 PRINTS Ethylene responsive element binding protein signature 252 263 IPR001471 GO:0003700|GO:0006355
Mtr8g0600 577 PRINTS Ethylene responsive element binding protein signature 393 413 IPR001471 GO:0003700|GO:0006355
Mtr8g0600 577 Gene3D AP2/ERF domain 353 413 IPR036955 GO:0003700|GO:0006355
Mtr8g0600 577 Gene3D AP2/ERF domain 250 319 IPR036955 GO:0003700|GO:0006355
Mtr8g0600 577 Pfam AP2 domain 352 403 IPR001471 GO:0003700|GO:0006355
Mtr8g0600 577 Pfam AP2 domain 251 309 IPR001471 GO:0003700|GO:0006355
Mtr8g0600 577 MobiDBLite consensus disorder prediction 431 523 - -
Mtr8g0600 577 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 3 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0600 Mtr-Chr8 7158144 7161954 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0600 1 439 AP2-EREBP Transcription Factor Family AT1G72570 50.647 5.58e-138 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mtr8g0600 AP2 7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0600 K09285 - gmx:100805489 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0600 8 7158144 7161954 Mtr8g0600 8 7158144 7161954 ECH