Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0582 ATGGCTTTTTCAGCATATGAGGAAATGTATATTCTCCCTGGGATCATAATCACTGGAGCACTAGTAATTGCTTTTACATTTTTCATTCTCACTATGTTAGGATGGTGCAGGGTTACCAATCATGAATCACGTCTTCCTACAACAGTCATATCTTCTAATGACAAATTTTCGGCTTGCATGAGTTTAGAGTCGCATTCAATCACATTTCTGTACAATGAAGCTGATGCTGCAAAAGGCATAAACCAGACTGAATGTGTTATCTGTTTAACAATCTTCCAAGAAGACGAAAGCGTTCGGAAGCTTCACACTTGCAAGCACATGTTTCATACATCTTGCATTGATAAGTGGCTTGCCTCTCATTTGGGATGTCCGTTGTGTCGCTCTCAGATTGATCAAGTAACTTCGCCAAATGGATCATTGACAAATAATGATCATCGGACTATGGAAATTGTTGACTCTAGGATTGAGAATATTCTGGTTCATAGCAACCTACTAGTGACAATGACATAG 510 0.3902 MAFSAYEEMYILPGIIITGALVIAFTFFILTMLGWCRVTNHESRLPTTVISSNDKFSACMSLESHSITFLYNEADAAKGINQTECVICLTIFQEDESVRKLHTCKHMFHTSCIDKWLASHLGCPLCRSQIDQVTSPNGSLTNNDHRTMEIVDSRIENILVHSNLLVTMT* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0582 169 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 25 146 IPR044675 -
Mtr8g0582 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 135 IPR013083 -
Mtr8g0582 169 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 25 146 - -
Mtr8g0582 169 SMART ring_2 85 126 IPR001841 -
Mtr8g0582 169 SUPERFAMILY RING/U-box 71 134 - -
Mtr8g0582 169 Pfam Ring finger domain 84 127 IPR001841 -
Mtr8g0582 169 ProSiteProfiles Zinc finger RING-type profile. 85 127 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0582 Mtr-Chr8 6959224 6959733 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0582 80 146 C3H Transcription Factor Family AT5G10380 49.254 3.40e-17 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0582 - - gmx:102661636 199.904