Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0572 ATGAAGCACTCATGGCCATGGGGGAGTTCTGAATCTGGTGTGCAACAATCCTCTATGTCAGAAAATCTAACTTTGAATATGAGTGTTTTGCAACAAGAATGCCACAAGTCTAAACCACTAGTTTTTCAATTTCAAGACCAAGATTCTTCTTCTACTCAATCAACTGGCCAATCTTATCTGGAAGTTGGTTCGGGACAATCCGGTCCAATTTCTGTCCAGTATAACAATTCCTCTACTTGTTCAACACTTAGCGAAACCGGTGGAAAGAGTACGGAAGGTATCATCTTGTCATCTGCAGGGAGTCGGGATTTTACTTTGCCTTCTTCTCAACTGGATCACAACCAATCACTTGCTCCTGTTGCATTCCCTCATGTTGAGACATACTCTAACGGCCTACTAGCAGCTCCATATGGATCACGGAATAATGTTAATCATGCTCAGCTAGCAGGAATGCCTCCCGTTCGGATTCCTTTGCCTCTTAATCTTTGTGAGGAACCAATATATGTGAACGCAAAGCAGTACCATGCTATTTTGAGACGTAGACAGTATCGTGCAAAGCTCGAAGCACAGAACAAACTCGTCAAAAATCGGAAACCATATCTACATGAGTCGCGCCATCTGCATGCATTGAAGAGAGCTAGAGGCTCTGGCGGGCGTTTTCTAAATACCAATAAGCTCCAAGACCATGGCTTTAATGTTTCCACCACCACTCGGGTGAATCCGAGTGGAAATGTGCCGGAATCAAGGGTACATCAAGTAGAAAAGTATAGAGATGGTGCTTCCACAACCACTTGTTCTGACGTCACATGTGCTTCTAATAGTGACGACATGTTCCAACAACATGAATCCGACTTCAGATCATGTGGTTACCCTTCTCATATGCAGGATTTATCAGCCGATGCCCGTGGTGGTGGTGGTGGTGGTGGGAATCAACACCGACTATCTGTCCTTATGTGA 957 0.4451 MKHSWPWGSSESGVQQSSMSENLTLNMSVLQQECHKSKPLVFQFQDQDSSSTQSTGQSYLEVGSGQSGPISVQYNNSSTCSTLSETGGKSTEGIILSSAGSRDFTLPSSQLDHNQSLAPVAFPHVETYSNGLLAAPYGSRNNVNHAQLAGMPPVRIPLPLNLCEEPIYVNAKQYHAILRRRQYRAKLEAQNKLVKNRKPYLHESRHLHALKRARGSGGRFLNTNKLQDHGFNVSTTTRVNPSGNVPESRVHQVEKYRDGASTTTCSDVTCASNSDDMFQQHESDFRSCGYPSHMQDLSADARGGGGGGGNQHRLSVLM* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0572 318 MobiDBLite consensus disorder prediction 232 256 - -
Mtr8g0572 318 MobiDBLite consensus disorder prediction 45 64 - -
Mtr8g0572 318 ProSitePatterns NF-YA/HAP2 subunit signature. 168 188 IPR018362 GO:0003677|GO:0016602
Mtr8g0572 318 MobiDBLite consensus disorder prediction 299 318 - -
Mtr8g0572 318 Gene3D - 163 224 - -
Mtr8g0572 318 MobiDBLite consensus disorder prediction 232 247 - -
Mtr8g0572 318 ProSiteProfiles NF-YA/HAP2 family profile. 163 223 IPR001289 GO:0003700|GO:0006355
Mtr8g0572 318 SMART cbf3 162 223 IPR001289 GO:0003700|GO:0006355
Mtr8g0572 318 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 6 289 IPR001289 GO:0003700|GO:0006355
Mtr8g0572 318 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 165 220 IPR001289 GO:0003700|GO:0006355
Mtr8g0572 318 PRINTS CCAAT-binding transcription factor subunit B signature 166 188 IPR001289 GO:0003700|GO:0006355
Mtr8g0572 318 PRINTS CCAAT-binding transcription factor subunit B signature 197 220 IPR001289 GO:0003700|GO:0006355
Mtr8g0572 318 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 6 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0572 Mtr-Chr8 6843712 6847520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0572 17 292 CCAAT-HAP2 Transcription Factor Family AT3G14020 45.172 1.05e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mtr8g0572 CBFB_NFYA 5.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0572 K08064 - gmx:100500765 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0572 8 6843712 6847520 Mtr8g0572 8 6843712 6847520 ECH
Mtr2g3462 2 48768156 48772492 Mtr8g0572 8 6843712 6847520 PCT