Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0571 ATGGACGCGCGCACACAATATAATCCACGCACCGTTGAGGAAGTTTTCAGAGATTTTAAGGGTCGTCGTGCTGGTCTCATCAAAGCTCTCACCACTGATGTTGAAGAGTTTTATACCCAATGTGATCCGGAGAAGGAGAATCTTTGCTTGTATGGCTTCCCTAGTGAGCAGTGGGAAGTCAATTTACCTGCTGAGGAAGTTCCGCCAGAGCTTCCCGAGCCTGTACTTGGCATTAACTTTGCCAGGGATGGCATGCAAGAGAAAGACTGGCTATCTTTGGTTGCTGTTCACAGTGATTCATGGTTAATCGCCATTGCGTACTACTTTGGTGCCAGATTTGGCTTCGACAAATCTGACAGGAAGCGCCTGTTCAACATGATCAATGATCTGCCATCAATATATGAAGTTGTTACTGGTGCTGCAAAGAAACAAGTTAAGGAGAAGTCTTCAGTTTCAAACCACAGTGGCAGCAAATCCAAGTCCAGCTCGAAAGCGCGGGCTCCAGAACCTCAGGTCAAGCAGACAAAGCCATTGGAGTTACCTAAAGATGATGAGGTGGAGGAACTGGACGAGGAAGATGAAGATGAACATGGAGAGACCTTATGTGGTGCATGCGGTGAGCATTATGGCACTGATGAATTCTGGATTTGCTGTGACATCTGCGAGAAGTGGTTCCATGGGAAATGTGTGAAGATCACCCCTGCTAGGGCTGAGCATATCAAGCAGTACAAGTGTCCATCATGCAGTAACAATAAGAGAGCTCGCCCTTGA 771 0.4708 MDARTQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYTQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDSWLIAIAYYFGARFGFDKSDRKRLFNMINDLPSIYEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKARAPEPQVKQTKPLELPKDDEVEELDEEDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNNKRARP* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0571 256 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 256 - -
Mtr8g0571 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 250 IPR013083 -
Mtr8g0571 256 SUPERFAMILY FYVE/PHD zinc finger 191 252 IPR011011 -
Mtr8g0571 256 MobiDBLite consensus disorder prediction 145 195 - -
Mtr8g0571 256 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Mtr8g0571 256 PANTHER CPG BINDING PROTEIN 6 256 IPR045104 GO:0006355|GO:0042393
Mtr8g0571 256 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Mtr8g0571 256 MobiDBLite consensus disorder prediction 150 169 - -
Mtr8g0571 256 CDD PHD_AL_plant 201 251 IPR044104 -
Mtr8g0571 256 SMART PHD_3 201 249 IPR001965 -
Mtr8g0571 256 Pfam PHD-finger 202 250 IPR019787 -
Mtr8g0571 256 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0571 Mtr-Chr8 6828414 6832847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0571 7 255 Alfin-like Transcription Factor Family AT3G42790 73.494 1.04e-121 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mtr8g0571 Alfin 2.9e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0571 - - gmx:100794662 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0571 8 6828414 6832847 Mtr2g3463 2 48773675 48777548 ECH
Mtr8g0571 8 6828414 6832847 Mtr8g0571 8 6828414 6832847 ECH
Mtr2g3463 2 48773675 48777548 Mtr8g0571 8 6828414 6832847 PCT