Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr8g0532 | ATGGGAAATCAAAAGCTGAAATGGACGAATGAAGAAGAAGACGCTCTTATCGCTGGAATCGAAACACATGGCCCTGGTAAATGGAAGGCCATTCTCCTTGATCCTCAGTTTGGTCCTTTACTCACTTCTCGTTCCAACATCGACCTCAAGGATAAATGGAGGAATATGAATGTGAATAATATTAGTCAAGTTCCTAAGTTTCCCAAGTGCAAACCTGATTCTCCTGCTCCTGTTTCTTCTTCTGGTGCTGCTGTTGATCAAACTGTTGCTCTTCCTTCTTCTGATGTTGTTAACAATGTTCCTCCTCCTCCTCCTCCTCCTCTTCAAATTGAACAAGATGTTGTTAAAAACAACACACCTAGGTATGATGTCATGATTTACGAAGCTCTGTCTACATTAAAGGATACTAATGGATCCGACGTAATTGCCATTGCTAGTTTCATTGAGCAAAAACATCAGGTTCCTCAAAATTTCAAAAAGTCACTGAAGGCAAGGTTGAGGATGCTTGTGGGTCATGGGAAGCTTGAAAAGGAACAAAACTGTTTCAAGATAAAAGAAGCTTTGTCAGTGAAAAAATCACCTTCACCAAAACAAAAGGAGGCCAAGCCATCACCTTCACCAAAACGAAAGATGGTCAGGCCGAAACGGCAATCATCAGACTCTGATGATATGCTGAAGGAAGCAGCTGAAACTGCAGCATACATAATTGCTGAAACTGAAAACAAATCATATCTGGCAACTGAGGCAGTCAAGGAGACGGAAAAATTCTCACGCATGGCTGAAGGAAATGATGCGATGTTATTGCTAGCTGAACAAGTTTATGAACAATGTTTGCGAGGCGAAACTATCAAATGGGCTTAA | 861 | 0.4123 | MGNQKLKWTNEEEDALIAGIETHGPGKWKAILLDPQFGPLLTSRSNIDLKDKWRNMNVNNISQVPKFPKCKPDSPAPVSSSGAAVDQTVALPSSDVVNNVPPPPPPPLQIEQDVVKNNTPRYDVMIYEALSTLKDTNGSDVIAIASFIEQKHQVPQNFKKSLKARLRMLVGHGKLEKEQNCFKIKEALSVKKSPSPKQKEAKPSPSPKRKMVRPKRQSSDSDDMLKEAAETAAYIIAETENKSYLATEAVKETEKFSRMAEGNDAMLLLAEQVYEQCLRGETIKWA* | 287 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr8g0532 | 286 | MobiDBLite | consensus disorder prediction | 187 | 224 | - | - | |
| Mtr8g0532 | 286 | Gene3D | - | 2 | 59 | - | - | |
| Mtr8g0532 | 286 | Pfam | Myb-like DNA-binding domain | 6 | 56 | IPR001005 | - | |
| Mtr8g0532 | 286 | PANTHER | TELOMERE REPEAT-BINDING FACTOR 4-RELATED | 1 | 285 | - | - | |
| Mtr8g0532 | 286 | SUPERFAMILY | Homeodomain-like | 3 | 58 | IPR009057 | - | |
| Mtr8g0532 | 286 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 118 | 186 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Mtr8g0532 | 286 | SMART | h15plus2 | 116 | 180 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Mtr8g0532 | 286 | Gene3D | - | 115 | 204 | IPR036388 | - | |
| Mtr8g0532 | 286 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 1 | 61 | IPR017930 | - | |
| Mtr8g0532 | 286 | SUPERFAMILY | "Winged helix" DNA-binding domain | 117 | 197 | IPR036390 | - | |
| Mtr8g0532 | 286 | ProSiteProfiles | Myb-like domain profile. | 1 | 57 | IPR001005 | - | |
| Mtr8g0532 | 286 | PANTHER | SINGLE MYB HISTONE 4 | 1 | 285 | IPR044597 | GO:0003691 | |
| Mtr8g0532 | 286 | CDD | SANT_TRF | 7 | 57 | - | - | |
| Mtr8g0532 | 286 | SMART | sant | 4 | 59 | IPR001005 | - | |
| Mtr8g0532 | 286 | MobiDBLite | consensus disorder prediction | 64 | 84 | - | - | |
| Mtr8g0532 | 286 | Pfam | linker histone H1 and H5 family | 120 | 177 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Mtr8g0532 | 286 | CDD | H15 | 120 | 197 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr8g0532 | Mtr-Chr8 | 6293003 | 6297027 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr8g0532 | 1 | 286 | Single Myb Histone (SMH) Gene Family | AT1G72740 | 42.955 | 1.71e-66 | 207 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Mtr8g0532 | Linker_histone | 4.5e-11 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr8g0532 | K09422 | - | gmx:780537 | 275.789 |