Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0530 ATGTCGTTGTCGACTCGTTCTCAAGGTTTTGGGAGGCCCTCTTCAATCAAGCAGTTTTATGTGGATGTTGACAAGGAAGAGTGGAAGCTAGAGACACTATGCGACATCTTTGAGCTGACCCTTAAAGCTTATAAATCCATCACTCATTGTATCGTCTTTGTGAATACTATCGACAAAGTGGACTGGCTCACGGACAAGATGCGAAGCAGAGATCATTATGTCATTCATGGTGACAGGGACCAGAACACTATGGATACCATTGAACGTGAGTTTCTTTTCGAGTCTGGCTCTCCTCAAGTTCTCATTACCACCGACCCCCTCGTTTGTGGTACAGATTTGCATAAAGCGTCTCTGGTCGTAAACTATGATCTCCCAACTGTGCCTGAAAACTATCTTAACCATATAGGCCGGAGTGGGAAATTTGCTATAAACTTCATGATAGAGGATGAGGCTAATATGCTCATAGATATTCAGAAATTCTACAACATGGTTATAGAGGAGCTGCCATGTAATTTTGAAGATTTACTCTGA 531 0.4237 MSLSTRSQGFGRPSSIKQFYVDVDKEEWKLETLCDIFELTLKAYKSITHCIVFVNTIDKVDWLTDKMRSRDHYVIHGDRDQNTMDTIEREFLFESGSPQVLITTDPLVCGTDLHKASLVVNYDLPTVPENYLNHIGRSGKFAINFMIEDEANMLIDIQKFYNMVIEELPCNFEDLL* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0530 176 Pfam Helicase conserved C-terminal domain 29 140 IPR001650 -
Mtr8g0530 176 PANTHER RNA HELICASE 15 176 - -
Mtr8g0530 176 Gene3D - 12 176 IPR027417 -
Mtr8g0530 176 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 15 176 IPR001650 -
Mtr8g0530 176 SMART helicmild6 61 142 IPR001650 -
Mtr8g0530 176 PANTHER EUKARYOTIC INITIATION FACTOR 4A-1 15 176 - -
Mtr8g0530 176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 171 IPR027417 -
Mtr8g0530 176 CDD SF2_C_DEAD 16 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0530 Mtr-Chr8 6270422 6271233 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0530 15 176 Eukaryotic Initiation Factors Gene Family AT1G72730 63.314 2.49e-66 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0530 K03257 - mtr:MTR_8g018330 279.641