Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0516 ATGACCACCTCTCACAAAAAGTATGATGTATTCGTTAGCTTCAGGGGAGAGGATACACGCTCAACCTTCACTGCACAGCTTTATCAAACACTCAAAAAGGAAAATATCATAACATACATTGACGAGAATCTTAACAAAGGAGAAGAGGTTGGTCCAGCACTTGTTCAAGCAATCCAAGAATCACGTATGTCTCTCGTGGTTTTCTCAGAAAACTATGCTTCCTCAAAATGGTGTTTGGATGAACTCCTCAAAATACTCGAATGTGGAAAATTTCATGATCAAGTGGTTATACCTGTGTTCTATAGAATTGATCCATCAGATGTACGTCATCAGACGGGAAGTTACAAGGAACCATTTGCAAATTACCAGATAGATCGCAAGAGCAATGAAGACAAAGTGTCTCAATGGAAAGCTGCTCTCACTGAGATCGCCAATATCTCCGGATGGGACTCCAGAATCTACGGGGATGATTCTCAACTCATTGAGAAAATTGTGGAAGATGTTGGGAAAAAGTTGTCTCGGATGTATCCTAATGAATTAAAAGGTCTTGTTCAAATTGATGAAAACATAGGATATACTGAATCACTACTGAAAAAGTATCAAAGAATTGGAATATGGGGCATGGGAGGAATCGGAAAGACAACCATAGCCAGACAAATGTTTGCCAAGCACTTTGCAGAATATGACAGCGCTTGCTTTTTGGAAAATGTAAGTGAAGATGTAGTAAAACTCGGACTAATACATGTTCGTAATAACCTTCTTGGTGAGCTACTAAATCGACAAATCAAAGCAACTGAGCATGGATCTGCATCGATTTGGAGGAGGCTGAGTGGTAGAAAAGTTTACATTGTACTTGATGATGTGAACACTGCATTGATATTAGAATATTTGTGTCAAGATCTTTATGACCTTGGACCACACAGTAGACTCATTATCACAACAAGAGACAAACATATTCTTAATGGAACAGTTGATGAGATATATGAGGTCAAAAAATGGAAGTTTAAAGAATCTCTAAAGCTTTTTAGTTTAGGAGCCTTCAAGCAAAGTTTTCCCATGGAGGGTTACAAACGTTTCTCAGAAAGGGCAGTTGAATATGCAGGAGGTGTTCCATTAGCTTTAAAAGTTTTGGGTTCATTTTTTTATTCAAGAAATCTTGAATTCTGGGAATCTGAATTGAATCATCTAGAGAAAAAAGGAGAATCCTTGGATGGAATTCAAGAAGTTTTAAAAGTGAGCTATAATAGATTAAAAGAACGATATCAGAAAATGTTTCTGAACATCGCATTCTTTTTCAAAGATGAAAATAAAGATTTTGTCATAAGGATACTTAGTGCAAGTGGTTTCAATGCTAGTAGTGGAATACAGATCCTTGAAGAAAAAGCTCTTGTAACAATTTCAAGCAGCAACAGGATACAAATGCATGATTTACTACAAAAAATGGCTTTCAATATAGTTCATAATATCAAAGGCCCAGAAAAGCTAAGCCGGTTGAGGGATAGCAAAAAAGTTAGTAGCATTCTTAAAAGTAAAAAGGATACTAGTGCGGTTGAAGGCATAATATTTGATTTATCTGAAGAGGTTGATTTACATATCCAAGCTGAAACATTCAAAGAGATGACTAAATTATGGTTTCTTAGATTTTATGTCCCTTTGGGTAAGAAGAGATCCACTACCTTGCATCATGATCAAGGTATTATGTCAATTTCTGATAAATTGAGATATCTTGAGTGGAGTGAATACCCATTTAAGTCTCTTCCACATGCTTTTTGTGCTAACCAGCTTGTTGAGATTCACTTGCCGCGAAGCAATGTAGAACATATTTGGGACGGAAATCAAGAACTTGTGAGTTTAGAGACAATCAATCTAAGCGAATGCAAGAAGTTGATCAAACTCCCTGATTTGTCTAGGGCAATAAAACTCAAATGCCTCTATCTTTCCGGTTGTCAAAGCTTATGTGCAATCGAGCCTCATATTTTTTCGAAGGACACACTTGTTACCGTGCTACTAGATAGGTGCGAAAAATTACAGAGTCTTAAAAGTGAGAAACATTTAAGATATCTTGAGAAGATCAATGTCAATGGCTGCTCTCAGCTTAAAGAATTTTCAGTGTTCTCAGATTCAATTGAAAGTTTGGATTTAAGCAACACAGGAATCAAAATATTGCAGTCATCAATCGGTCGCATGAGGAAGCTTGTGTGGCTCAATTTAGAAGGCTTGCGACTTAAGAATCTACCCAATGAATTGTCTAACCTGAGATCACTTACAGAGCTTTGGCTTTGTAATTGCAACATAGTAACTACATCCAAGTTAGAATCCATATTTGATGGTCTGGAATCATTAACAAGATTATATTTGAAAGATTGCCGATACTTGATTGAAATCCCTGCCAACATCAGTTCCTTATCATCATTATATGAATTAAGACTAGATGGAAGCAGTGTGAAGTTCTTGCCTGCAAACATCAAGTATGTCTTAAGGCTAGAAATTATCTCCTTAGACAATTGCACAAAGCTTCGTATTTTGCCAGAGCTTCCACCACACATCAAAGAGTTTCATGCCGAAAATTGCACCTCATTGGTCACCATATCTACTTTGAAGACTTTTTCAGGAAGCATGAACGGAAAGGACATATACATTTCATTCAAGAATTGTACGAGTTTGGATGGGCCCTCCCTTCACGGAAATCTTGAAGATGCTATATCAACAATGAAAAGTGCTGCATTTCACAATATATTAGTAAGAAAGTACAGTTTGCAAACACGCAACTATAATTATAACAGGGCCGAGTTTTGTTTACCCGGAAGAAGAGTTCCACGACAGTTCCAATATCAAACAAAAGAATCTTGCATAAATATTGAACTTTCTAAACTCTCCTATTCATTGGGATTCATTTTCTCAGTTATTATTGCTCCTCCACCCATTAATACATTCAATGATGGTCTTACAATTCAATGTCAGTGTTATTCAAAAGATCGAAAGATGGTGGGATATGCGTCTAAGTGGCATCACAAAAACACCACAAGATTGAATTCAGATCATATTTTTGTGTGGTATGATCCGTACATTTCTGACATCATATGGGAAAGTGATGAAACAAATGTTACTTTTGAATTCTCTGTTTCTACTGTTTCAGCGGAAGGAGTTTATAACAACTTTATGACAGTCACAATGAAAGAATGTGGGATCTGCCCAATTTATTTCTCAGAATTTCAAATGCTTTTAAGCATACTAAATTTGGACAAGGAATCACAATTAAATTTGTGCGATGCTGTGAAATCTGAGTCAACATTACATGGAAGGTATGAGGAGGTATGCAGTTACATTGAATCAAGTGACACATGTGGTGGGGAGTCAAGCTCGGACGATGGTACCGAGCTACCAAACCAAGAGTTGGCCTTGAATCAAAAATGTGACTGCTTAATAGATTGCTCAACATTTGAGGCGGCAGCAGCAGCAGCAAGTCAGGTCTTCTGCATTATAAGTGCAGGAAACATGGTTTGA 3504 0.3707 MTTSHKKYDVFVSFRGEDTRSTFTAQLYQTLKKENIITYIDENLNKGEEVGPALVQAIQESRMSLVVFSENYASSKWCLDELLKILECGKFHDQVVIPVFYRIDPSDVRHQTGSYKEPFANYQIDRKSNEDKVSQWKAALTEIANISGWDSRIYGDDSQLIEKIVEDVGKKLSRMYPNELKGLVQIDENIGYTESLLKKYQRIGIWGMGGIGKTTIARQMFAKHFAEYDSACFLENVSEDVVKLGLIHVRNNLLGELLNRQIKATEHGSASIWRRLSGRKVYIVLDDVNTALILEYLCQDLYDLGPHSRLIITTRDKHILNGTVDEIYEVKKWKFKESLKLFSLGAFKQSFPMEGYKRFSERAVEYAGGVPLALKVLGSFFYSRNLEFWESELNHLEKKGESLDGIQEVLKVSYNRLKERYQKMFLNIAFFFKDENKDFVIRILSASGFNASSGIQILEEKALVTISSSNRIQMHDLLQKMAFNIVHNIKGPEKLSRLRDSKKVSSILKSKKDTSAVEGIIFDLSEEVDLHIQAETFKEMTKLWFLRFYVPLGKKRSTTLHHDQGIMSISDKLRYLEWSEYPFKSLPHAFCANQLVEIHLPRSNVEHIWDGNQELVSLETINLSECKKLIKLPDLSRAIKLKCLYLSGCQSLCAIEPHIFSKDTLVTVLLDRCEKLQSLKSEKHLRYLEKINVNGCSQLKEFSVFSDSIESLDLSNTGIKILQSSIGRMRKLVWLNLEGLRLKNLPNELSNLRSLTELWLCNCNIVTTSKLESIFDGLESLTRLYLKDCRYLIEIPANISSLSSLYELRLDGSSVKFLPANIKYVLRLEIISLDNCTKLRILPELPPHIKEFHAENCTSLVTISTLKTFSGSMNGKDIYISFKNCTSLDGPSLHGNLEDAISTMKSAAFHNILVRKYSLQTRNYNYNRAEFCLPGRRVPRQFQYQTKESCINIELSKLSYSLGFIFSVIIAPPPINTFNDGLTIQCQCYSKDRKMVGYASKWHHKNTTRLNSDHIFVWYDPYISDIIWESDETNVTFEFSVSTVSAEGVYNNFMTVTMKECGICPIYFSEFQMLLSILNLDKESQLNLCDAVKSESTLHGRYEEVCSYIESSDTCGGESSSDDGTELPNQELALNQKCDCLIDCSTFEAAAAAASQVFCIISAGNMV* 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0516 1167 SUPERFAMILY "Winged helix" DNA-binding domain 405 488 IPR036390 -
Mtr8g0516 1167 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 149 IPR035897 -
Mtr8g0516 1167 Gene3D - 174 331 IPR027417 -
Mtr8g0516 1167 Gene3D - 4 173 IPR035897 -
Mtr8g0516 1167 PANTHER NB-ARC DOMAIN PROTEIN 6 948 - -
Mtr8g0516 1167 PANTHER NB-ARC DOMAIN PROTEIN 995 1116 - -
Mtr8g0516 1167 SUPERFAMILY L domain-like 522 943 - -
Mtr8g0516 1167 PRINTS Disease resistance protein signature 202 217 - -
Mtr8g0516 1167 PRINTS Disease resistance protein signature 275 289 - -
Mtr8g0516 1167 PRINTS Disease resistance protein signature 367 381 - -
Mtr8g0516 1167 PRINTS Disease resistance protein signature 613 629 - -
Mtr8g0516 1167 Gene3D Ribonuclease Inhibitor 709 909 IPR032675 -
Mtr8g0516 1167 Gene3D Ribonuclease Inhibitor 522 708 IPR032675 -
Mtr8g0516 1167 Pfam NB-ARC domain 202 415 IPR002182 GO:0043531
Mtr8g0516 1167 ProSiteProfiles TIR domain profile. 6 172 IPR000157 GO:0007165
Mtr8g0516 1167 Gene3D - 334 418 IPR042197 -
Mtr8g0516 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 427 IPR027417 -
Mtr8g0516 1167 Pfam C-JID domain 933 1070 IPR045344 -
Mtr8g0516 1167 Pfam TIR domain 7 181 IPR000157 GO:0007165
Mtr8g0516 1167 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 995 1116 IPR044974 GO:0006952
Mtr8g0516 1167 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 948 IPR044974 GO:0006952
Mtr8g0516 1167 SMART till_3 7 146 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0516 Mtr-Chr8 6120328 6135189 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0516 3 808 WRKY Transcription Factor Family AT4G12020 30.881 3.19e-85 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0516 - - mtr:MTR_8g018060 2325.44