Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0506 ATGGGACATCACTCTTGTTGCAACAAACAGAAGGTTAAAAGAGGATTATGGTCACCTGAAGAAGATGAAAAACTCATCAAATATATTACAACATATGGACATGGTTGTTGGAGTTCTGTTCCAAAACTTGCTGGTCTGCAGAGATGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAGTTTCTCTCATCAAGAAGTAGCACTCATTGTAGAACTACACAACATTCTAGGCAATAGATGGGCTCAGATTGCAAAACACTTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAACCATAAAGAAGAAAATCCTTTGTCATGATATTATTCCATCTTTCACCACATTTTCTGAAATTCACACCCCCTACCATAATATTGGTTCAATGGAAAACTCATTCCCTTTAAATGCAAACCCTAATGTGATCCTCAACTTCAATCATTATAACCATCAAGATTACCTATACCATTCAACCTCATCTCCAAATCTACAAGGTAATTTTCATCAAATTGATACAAAGGTAGACATCAATGACCATTATAATGCCAATTTCCCTCACATTCAAAATCCAATACCACAAAATATAGTACAACCAATATCTGATCCTTTTCCATATGAAGACGGTGTAGCCCTTCATCTCAACCCAGTTAATCAATATTCAAAAAGTGATACGACCCCACTTAACAAATTAATGAACCCAATTGAATTAATGCAACAATATGATCAATATCATGATTTGGTTGAACTTGATGCTACTATGCCTGAATTAGTCAATCATCAAAGCCTTGAGGATTATGCTTGTAACATCCTAGATTCATCTAATTCGCAAGAACATGAAGCTCCAGCGAAAATTCAGTGCTACACGTATGGTCTTATTCATCCACAAGATCAAAATGTGGAAGCTAATCCATTGGATTACAATATTGATGCTCTCATGTGCATGTCATCATTGTCATCCTCAAGCAGCCACATAGTCACTAATCCTATTATTCCTTTAGGATGGGAGTCTTAA 1047 0.3582 MGHHSCCNKQKVKRGLWSPEEDEKLIKYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSHQEVALIVELHNILGNRWAQIAKHLPGRTDNEVKNFWNSTIKKKILCHDIIPSFTTFSEIHTPYHNIGSMENSFPLNANPNVILNFNHYNHQDYLYHSTSSPNLQGNFHQIDTKVDINDHYNANFPHIQNPIPQNIVQPISDPFPYEDGVALHLNPVNQYSKSDTTPLNKLMNPIELMQQYDQYHDLVELDATMPELVNHQSLEDYACNILDSSNSQEHEAPAKIQCYTYGLIHPQDQNVEANPLDYNIDALMCMSSLSSSSSHIVTNPIIPLGWES* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0506 348 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Mtr8g0506 348 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr8g0506 348 PANTHER MYB DOMAIN PROTEIN 55 1 336 - -
Mtr8g0506 348 PANTHER TRANSCRIPTION FACTOR MYB26 1 336 - -
Mtr8g0506 348 CDD SANT 17 61 IPR001005 -
Mtr8g0506 348 SMART sant 13 63 IPR001005 -
Mtr8g0506 348 SMART sant 66 114 IPR001005 -
Mtr8g0506 348 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mtr8g0506 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mtr8g0506 348 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr8g0506 348 Gene3D - 69 116 - -
Mtr8g0506 348 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr8g0506 348 Gene3D - 11 67 - -
Mtr8g0506 348 CDD SANT 69 109 IPR001005 -
Mtr8g0506 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0506 Mtr-Chr8 6003626 6005725 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0506 1 117 MYB Transcription Factor Family AT3G13890 90.598 2.06e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr8g0506 Myb_DNA-binding 6.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0506 K09422 - gmx:100785147 396.356