Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0495 ATGGTAAAAGGTTTGATGATGTTTCAACAGCAACAAGTAGTGGAAGAAAACATGTCAAACTTAACTTCTGCATCTGGTGAAGCTAGTGTTTCTTCTGGTAATAGAACTGAAATTGGTACTAGTAGTAGTTACCCTCAAGTTCAACAACAATACTTGGTTCCTCCAACACAATCTCAACCAATGAAAAAAAAGAGAAACCTCCCTGGTAACCCAGACCCTGATGCTGAAGTTATAGCTATGTCACCAAAGAGTTTACTAGCAAAAAACAGGTTCATATGTGAGATCTGCAACAAAGGGTTTCAAAGAGATCAAAATCTTCAACTTCACAGAAGAGGTCATAATTTACCATGGAAGTTGAAACAAAGAACAAGTAAAGAGATTAGAAAGAAAGTATATGTATGTCCAGAACCAACTTGTGTGCATCATGATCCATCAAGAGCATTAGGGGATTTGACTGGAATCAAGAAACACTTTTCCAGAAAGCATGGTGAGAAGAAGTGGAAATGTGAAAAGTGTTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAAACTTGTGGCACTAGAGAATATAGATGTGACTGTGGAACCCTCTTCTCAAGAAGGGACAGTTTCATAACACATAGAGCATTTTGTGATGCATTAGCAGAAGAGAGTGCAAGAGCTATGACAAATAATGCAATGCCAATTTTACCCTCACAACAACAACTTTCATCATCATCTTCTCATCATCATCACATGATAAATCTACAAAACCAATTCAATAATCCTCAACAAGATCTTCATAATTTCCCATTATTGAAAAAAGAGCAACATAATCAAAGTTTTAACCTTTCTGAAATTCCACCTTGGCTTGGCCCACATAATGTTGATAATCTCTCATCATCATCATCAATATTTTCTCAACATCATCATCATCAAGAAAACCCTAACCCTAGTCTTGTTCATGTTTCTGGACCCACACTCCCTTCTTACCAAACAGTACCTTCGGCACACATGTCAGCTACTGCATTGTTGCAGAAAGCAGCTCAAATGGGTGCAACAATGAATAGAAGTGGTTCTGCTTCTTCACCTGCTATGAATATCAAGACCCACCAAGTTGATTCTCTCAATAATGTCTCTGGTAATTTTGGTTTGAATTTGTTGTCATCATCACAAGAACAACAGCAACATCAACAAAACACACAAGAAACAAATACTACTTCAACATATCTTAATAATATTCATGATGTTATGTTTTCTTCTTCTTCATCTCCTTCTGGATTTGAAGCAACCCATTTTGATGAAATGTTTGGTGGCATTATGAATTCAAAGAAAGATCAAAACTTGCATCATGAAACAAGCCTCTCTAAAAAACCAACTTCCACCGCCGAAGACGGTGGTGGCGGTGGCGGCGGAGGTGGTGGAAATGAGGGTTTGACAAGAGATTTCTTGGGGCTTAGGCCATTGTCACATAGTGATATTCTAAGTATTGCAGGGATTGGAAACTGCATGAATGATCAACAACAACAAAATCAATCTCAAAAGCCATCATGGCAAGGTTAG 1554 0.3777 MVKGLMMFQQQQVVEENMSNLTSASGEASVSSGNRTEIGTSSSYPQVQQQYLVPPTQSQPMKKKRNLPGNPDPDAEVIAMSPKSLLAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAMTNNAMPILPSQQQLSSSSSHHHHMINLQNQFNNPQQDLHNFPLLKKEQHNQSFNLSEIPPWLGPHNVDNLSSSSSIFSQHHHHQENPNPSLVHVSGPTLPSYQTVPSAHMSATALLQKAAQMGATMNRSGSASSPAMNIKTHQVDSLNNVSGNFGLNLLSSSQEQQQHQQNTQETNTTSTYLNNIHDVMFSSSSSPSGFEATHFDEMFGGIMNSKKDQNLHHETSLSKKPTSTAEDGGGGGGGGGGNEGLTRDFLGLRPLSHSDILSIAGIGNCMNDQQQQNQSQKPSWQG* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0495 517 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 499 - -
Mtr8g0495 517 SMART c2h2final6 167 187 IPR013087 -
Mtr8g0495 517 SMART c2h2final6 132 162 IPR013087 -
Mtr8g0495 517 SMART c2h2final6 91 113 IPR013087 -
Mtr8g0495 517 Pfam Zinc-finger double-stranded RNA-binding 91 113 IPR022755 -
Mtr8g0495 517 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
Mtr8g0495 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Mtr8g0495 517 Gene3D Classic Zinc Finger 145 225 - -
Mtr8g0495 517 MobiDBLite consensus disorder prediction 24 48 - -
Mtr8g0495 517 MobiDBLite consensus disorder prediction 444 480 - -
Mtr8g0495 517 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Mtr8g0495 517 Gene3D Classic Zinc Finger 72 137 - -
Mtr8g0495 517 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 20 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0495 Mtr-Chr8 5747879 5750937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0495 14 351 IDZ Gene Family AT1G55110 61.176 1.58e-131 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr8g0495 zf-C2H2_jaz 7.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0495 K25870 - gmx:100808344 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3490 2 49012181 49015178 Mtr8g0495 8 5747879 5750937 PCT