Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0490 ATGAACAACAAAAACAACAATAACACCACTCAAGCATGTGCTGCATGTAAATACCAACGTAGAAAATGTGCACCTGATTGCATTCTAGCACCTTACTTTCCTCATGATAGACAAAGACAATTCCTTAATGCACACAAATTATTTGGAGTTAGCAACATTAATAAAATCATTAAATTTCTTGACCCTCCTCTTAAAGATCAAGCCATGAGGACGATCATTTTTCAATCTGATATGCGGGCTAATGATCCTGTTGGTGGTTGTTATAAATATATTCAAGATCTTCAAGCTCAAATTGAATATTATAAATTAGAACTTGATCTTGTTCATCAACAACTCGCGATATTTCGATCACAATCTCAACAACAACAACAACAAATACAGGTTAATTATGGTGATCAAGGTATTATGAATTCAGACCCATTGTTAGGTTTTTATAATCCATCAGGATCTATTGTTCCGGGTACTGTGCCGGCTCATTATCATTACAATGTTCAAGAACAAGTTGTGCCACAATTACAAGAACATGGACAGGAACAGGAACAAGAACAATACATTATAACTGAAGAAAGAAATAGTAGTAGTGTTAATACAACTCCTTTGCAACAACATAATAATAATTGGGGGGCTATTTCTCTATCATCATTGTCATTGCATGGCCAAAGTAGTAATGCTAGTGATGAGTATGATCATAAGCCAATTCTTGATATACCTTGTGATGAAAGAAATGAATTAGGGTTCGACTCCGGAGAAATACTTCACCACAGTGATGAAGCGGTTTTGTTTAAGATAGACGATGGATTGATTAAATCAGATGGTGACTACATTCAACAAACACAAGTTCAAGCTCAAGATCAAGATCATGATCTGAAAGGTGCAGCAACATTGTTTACTTTGACAAATTGTACCAGTTGA 912 0.3509 MNNKNNNNTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNINKIIKFLDPPLKDQAMRTIIFQSDMRANDPVGGCYKYIQDLQAQIEYYKLELDLVHQQLAIFRSQSQQQQQQIQVNYGDQGIMNSDPLLGFYNPSGSIVPGTVPAHYHYNVQEQVVPQLQEHGQEQEQEQYIITEERNSSSVNTTPLQQHNNNWGAISLSSLSLHGQSSNASDEYDHKPILDIPCDERNELGFDSGEILHHSDEAVLFKIDDGLIKSDGDYIQQTQVQAQDQDHDLKGAATLFTLTNCTS* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0490 303 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Mtr8g0490 303 Coils Coil 91 111 - -
Mtr8g0490 303 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 239 - -
Mtr8g0490 303 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 7 239 - -
Mtr8g0490 303 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0490 Mtr-Chr8 5707163 5708531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0490 11 125 AS2 family AT3G13850 73.913 1.87e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr8g0490 LOB 1.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0490 - - pvu:PHAVU_010G138500g 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0490 8 5707163 5708531 Mtr8g0490 8 5707163 5708531 ECH
Mtr2g3492 2 49048470 49050068 Mtr8g0490 8 5707163 5708531 PCT