Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0480 ATGGCTATGTCATTGGCTTCTTCCTCTCACAGTGCTGCTCAGAAGAAATATGATGTCTTCATCAGCTTTCGAGGCGAAGATACTCGCGCTGGTTTCACAAGTCATCTTCACGCTGCTCTTTCCCGAACCTATTTACATACTTACATAGACTATAGGATCGAGAAAGGAGATGAAGTTTGGCCAGAACTTGAGAAAGCAATCAAACAATCAACTCTGTTTCTTGTTGTGTTCTCAGAGAACTATGCTTCTTCAACATGGTGTTTGAATGAACTTGTTGAACTAATGGAGTGCCGTAACAAAAATGAAGACGACAACATTGGTGTGATTCCTGTGTTCTACCATGTTGACCCTTCACATGTGCGGAAGCAGACCGGGAGTTATGGCAGTGCATTGGCGAAACACAAGCAAGAGAACCAAGATGATAAGATGATGCAAAATTGGAAGAATGCTCTTTTTCAAGCTGCTAATTTGTCTGGTTTTCATTCCTCGACATACAGGACTGAATCTAACATGATTGAAGACATTACCAGAGCTTTATTAGGGAAATTGAATCACCAGTACAGAGATGAACTTACATGTAATTTGATACTTGATGAAAACTATTGGGCCGTTCGATCTTTAATAAAATTTGATTCAACAACAGTTCAAATCATTGGACTTTGGGGAATGGGAGGCACTGGTAAGACAACTCTTGCTGCTGCTATGTTTCAAAGGTTCTCTTTCAAATATGAAGGCAATTGCTTCTTAGAAAGGGTGACAGAAGTTTCAAAAAAGCATGGAATCAATTACACGTGCAACAAACTTCTTTCCAAGTTACTAGGGGAAGATCTTCGTATTGACACTCCCAAAGTAATCCCAGCCATGATCAAGAGAAGACTCAGACATATGAAATCTTTCATTGTATTAGATGATGTACATAACTCTGAACTTCTGCAAGACTTGATTGGAGTGAGAGGTGGTTGGCTTGGACCTGGTAGCATAGTCATTGTGACGACTAGGGATAAACATGTGCTGATAAGTGGAGGAATTGACGAAATTTATGAAGTTAAGAAGATGAACTCCCAAAATTCCCTCCAACTTTTTAGCCATGTTAAAGAAGTATATTCCATATTGTCTACTTTTATTTTAATATTAATATAA 1140 0.3877 MAMSLASSSHSAAQKKYDVFISFRGEDTRAGFTSHLHAALSRTYLHTYIDYRIEKGDEVWPELEKAIKQSTLFLVVFSENYASSTWCLNELVELMECRNKNEDDNIGVIPVFYHVDPSHVRKQTGSYGSALAKHKQENQDDKMMQNWKNALFQAANLSGFHSSTYRTESNMIEDITRALLGKLNHQYRDELTCNLILDENYWAVRSLIKFDSTTVQIIGLWGMGGTGKTTLAAAMFQRFSFKYEGNCFLERVTEVSKKHGINYTCNKLLSKLLGEDLRIDTPKVIPAMIKRRLRHMKSFIVLDDVHNSELLQDLIGVRGGWLGPGSIVIVTTRDKHVLISGGIDEIYEVKKMNSQNSLQLFSHVKEVYSILSTFILILI* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0480 379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 364 IPR027417 -
Mtr8g0480 379 SMART till_3 16 157 IPR000157 GO:0007165
Mtr8g0480 379 Gene3D - 192 341 IPR027417 -
Mtr8g0480 379 Gene3D - 13 190 IPR035897 -
Mtr8g0480 379 PRINTS Disease resistance protein signature 217 232 - -
Mtr8g0480 379 PRINTS Disease resistance protein signature 292 306 - -
Mtr8g0480 379 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 160 IPR035897 -
Mtr8g0480 379 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 362 IPR044974 GO:0006952
Mtr8g0480 379 Pfam NB-ARC domain 207 363 IPR002182 GO:0043531
Mtr8g0480 379 Pfam TIR domain 16 189 IPR000157 GO:0007165
Mtr8g0480 379 ProSiteProfiles TIR domain profile. 15 183 IPR000157 GO:0007165
Mtr8g0480 379 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 11 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0480 Mtr-Chr8 5563173 5566771 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0480 12 372 WRKY Transcription Factor Family AT4G12020 27.493 5.89e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0480 - - mtr:MTR_8g016480 752.666