Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0478 ATGGCTATGTCCCTGGCATCTTCTTCCTCTCACCACGCTTCTTTGAAGAAATATGATGTTTTCATCAGCTTTCGAGGCGAAGATACACGCGTTGGTTTCATAAGCCATCTTTATAAAGCTTTGCGCCGAAAACATATCCATACCTACATTGACAACTTGATTGAAAAAGGAGATCAAGTTTGGGCAGAACTTGTGAAGGCAATGAAACAATCCACTTTGTTTCTTGTCGTGTTCTCGAAGAACTACGCATCTTCAACATGGTGTTTGAACGAACTGGTTGAGATAATGGAGTTATTCGACATTAACAAAAATGAAGATGACAACGTTGTTGTTATTCCTGTGTTCTACCATGTTGACCCTTCACACGTGAGGAAGCAAACTGGGAGTTATGGCACTGCCTTGGCTAAACACAAGAAGCAAGGCAACGACCATGAGATGCAAAAATGGAATACTGCTCTTTCTGAAGCTGCTAATTTGTCTGGTTTTCATTCAACCACATACAGGACTGAATCCGAATTAATTGGAGACATTACCGGAGCTGTATTAAGAAAATTAAATCAACAAAGCACAATTGATCTTACTTGTAATTTCATACCTGATGAAAACTATCGGAGCATTCAATCTTTAATAAAATTTGATTCAACAGAAGTTCAAATCATTGGAGTTTGGGGTATGGGAGGCATTGGTAAGACAACCCTTGCCACTGCTATGTTTCAAAGGGTCTCTTTCAAATATGATGGCAGTTGCTTCTTTGAAAAGGTTACAGAAGTATCAAAAAGTCGTGGAATCAATTACACATGCAACAAACTTCTTTCTAAGTTACTAAAAGAAGATCTTGATATTGACACTCCCAAACTAATATCATCCATGATCAGAAGAAGACTCAAAAGCATGAAATCTTTCATTGTACTAGATGATGTACATAATTCAGAACTTCTGCAAAACTTGATTGGAGTAGGACATGGTTGGCTAGGATCTGGTAGTACAGTCATTGTGACTACTAGGGATAAACATGTGCTGATAAGTGGAGGAATTAAGACAATATATGAAGTTAAGAAGATGAACTCCCGAAATTCCCTCCGACTTTTTTGTTTGAATGCTTTTAACAAAGTCTCACCTAAGGATGGATATGTGGAGCTCTCAAAAAGAGCAATTGATTATGCCAGAGGAAACCCTTTAGCTTTACAAGTATTGGGATCATTACTTAGTTGTAAAAATGAAAAAGAATGGGATTGTGCATCAGCTAAACTGAGAAAAATACCAAACAATGAAATTGATTCTATATTCAGATTGAGTTTTAATGAATTGGATAAAACAGAGCAAAATATATTTTTGGATATTGCATTCGTTTTCAAAGGACAGGAAAGGAATAGCATAACAAAAATATTGAATGAGTGTGGGTTCTTCGCTGATATAGGGATAAGTCGTCTTTTAGACAAGGCTCTTGTAACGGTAGACTCTGAAAATTGCATACAAATGCATGGCTTGATACAGGAAATGGGAAAACAAATTGTTCGTGAAGAATCACTTAAGAATCCCGGACAACGCAGTAGATTATGTGATCCTGAGGAAGTTTATGACGTATTGAAAAATAATAGAGGATCTGAGAAAGTTGAAGCCATATATTTAGATGCTACTGAATCCATTCATGTAAATTTAAGACCCGATGCATTTGAAAATATGGAAAATCTAAGGTTGCTTGCTTTTCAAGACCGCGAAGGAGTTACATCTATAAGGTTTCCACACGGTCTTGGTTTATTGCCAAAAAATCTAAGATTTCTTCGATGGGATGGCTATCCATTGAAAACTGTCCCTCTAACCTCCTCTCTTGAAATGCTTGTGGAGCTTTCCTTGAAACAAAGCCATGTGGAAAAACTTTGGAATGGAGTAGTGAATTTGCCCAATTTAGAGATAATTGACCTCAATGGCTCCAAAAAGCTGATAGAGTGTCCAAACGTGTCTGGTTCTCCGAATCTAAAAGAAGTAATACTTAGAGAATGTGAAAGCATGCCTGAAGTTGATTCATCAATTTTCCATCTCCAAAAGCTTGAAAGATTAAACGTGTGTGGGTGTACGTCGCTTAAGAGCCTTTCCAGTAACACTTGTTCACCAGCCCTCCGTCATTTTAGTTCTGTATATTGCATCAATCTTAAAGAGTTCTCAGTCCCATTAACTTCCGTTCATTTGCATGGGCTTTATACAGAGTGGTATGGGAATGAACTTCCATCATCTATATTGCATGCACAAAATCTTAAAAACTTTGGCTTTTCTATTAGTGATTGTCTTGTGGATCTTCCTGAAAACTTTTGCGATTCTTTTTATCTTGTGAGTGAAAAGAATCGTGAAAATGACCCTTTCATCACCTTAGATAAAAATACTTTCTTCTGGTCCTGCCTTCCGGACTGTAAAAGAATTGATCATTGTTGA 2427 0.3721 MAMSLASSSSHHASLKKYDVFISFRGEDTRVGFISHLYKALRRKHIHTYIDNLIEKGDQVWAELVKAMKQSTLFLVVFSKNYASSTWCLNELVEIMELFDINKNEDDNVVVIPVFYHVDPSHVRKQTGSYGTALAKHKKQGNDHEMQKWNTALSEAANLSGFHSTTYRTESELIGDITGAVLRKLNQQSTIDLTCNFIPDENYRSIQSLIKFDSTEVQIIGVWGMGGIGKTTLATAMFQRVSFKYDGSCFFEKVTEVSKSRGINYTCNKLLSKLLKEDLDIDTPKLISSMIRRRLKSMKSFIVLDDVHNSELLQNLIGVGHGWLGSGSTVIVTTRDKHVLISGGIKTIYEVKKMNSRNSLRLFCLNAFNKVSPKDGYVELSKRAIDYARGNPLALQVLGSLLSCKNEKEWDCASAKLRKIPNNEIDSIFRLSFNELDKTEQNIFLDIAFVFKGQERNSITKILNECGFFADIGISRLLDKALVTVDSENCIQMHGLIQEMGKQIVREESLKNPGQRSRLCDPEEVYDVLKNNRGSEKVEAIYLDATESIHVNLRPDAFENMENLRLLAFQDREGVTSIRFPHGLGLLPKNLRFLRWDGYPLKTVPLTSSLEMLVELSLKQSHVEKLWNGVVNLPNLEIIDLNGSKKLIECPNVSGSPNLKEVILRECESMPEVDSSIFHLQKLERLNVCGCTSLKSLSSNTCSPALRHFSSVYCINLKEFSVPLTSVHLHGLYTEWYGNELPSSILHAQNLKNFGFSISDCLVDLPENFCDSFYLVSEKNRENDPFITLDKNTFFWSCLPDCKRIDHC* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0478 808 SMART till_3 17 159 IPR000157 GO:0007165
Mtr8g0478 808 Gene3D - 188 343 IPR027417 -
Mtr8g0478 808 PRINTS Disease resistance protein signature 219 234 - -
Mtr8g0478 808 PRINTS Disease resistance protein signature 294 308 - -
Mtr8g0478 808 PRINTS Disease resistance protein signature 388 402 - -
Mtr8g0478 808 PRINTS Disease resistance protein signature 631 647 - -
Mtr8g0478 808 Gene3D - 14 187 IPR035897 -
Mtr8g0478 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 447 IPR027417 -
Mtr8g0478 808 Gene3D - 353 437 IPR042197 -
Mtr8g0478 808 Gene3D Ribonuclease Inhibitor 536 708 IPR032675 -
Mtr8g0478 808 Pfam NB-ARC domain 206 436 IPR002182 GO:0043531
Mtr8g0478 808 ProSiteProfiles TIR domain profile. 16 185 IPR000157 GO:0007165
Mtr8g0478 808 SUPERFAMILY L domain-like 493 770 - -
Mtr8g0478 808 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 162 IPR035897 -
Mtr8g0478 808 Pfam TIR domain 17 191 IPR000157 GO:0007165
Mtr8g0478 808 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 761 IPR044974 GO:0006952
Mtr8g0478 808 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 12 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0478 Mtr-Chr8 5526549 5535301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0478 13 766 WRKY Transcription Factor Family AT4G12020 30.909 1.41e-89 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0478 - - mtr:MTR_8g038815 1220.68