Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0455 ATGACTTACTTTGAGAATGAGAACACCATAGGTGATATTTCTGAGCCATTGCTAGCTCAGAAAGTTGAAACAAAACAAACAGGACTAGGCCATGCTACTTTTCTCAGCAAGTTGATTTTCTCTTGGGTTAATTCTCTACTCAGATTAGGTTACTCAAAGCCACTAGATCTTGAAGACATACCTTCCCTTGTTTCTGAAGATGAAGCAGACATGGCTTATCAAAAATTCGTTCGTGCTTGGGAATCACTTGTTAGAGACAAGACAAAGAATAATACAAAGAGTTTGGTTCTTTGGTCTATAATTAGAACTTTCTTAAAAGAAAACATATTAATAGCATTTTATGCATTAATCAGAACTATTTCTGCTGTAGTTTCACCTCTTATACTTTATGCTTTTGTTAACTACTCAAATAGAACTGAGGCAGATCTCAAACAAGGTCTTTCCATAGTTGGTATTTTAATTCTAACCAAATTAGTTGATTCTCTGTCTCAAAGACATTGGTTTTTTAACTCAAGGAGGTCAGGAATGAAAATGAGATCAGCTCTTATGGTGGCAATTTATCAAAAGCAACTAAAGCTTTCTAGCTCGGCAAGGACAAGACACTCGGCCGGTGAAATTGTGAATTACATTGTAGTTGATGCATATAGAATGGGAGAATTTCCATGGTGGTTTCATATGGCATGGGCTTCTGCACTTCAAATTGTTTTGTCTATTTTTATTCTTTTTGGTGTTGTAGGTATTGGTGCTCTTCCAGGTTTAGTCCCTCTTCTTATATGTGGACTCCTCAATGTACCATTTGCAAGGATCCTACAAAATTGTCAGTCACAGTTTATGATTTCACAGGACGAACGTCTTCGATCAACTTCGGAAGTTCTAAATAGTATGAAGATCATTAAGTTACAATCATGGGAAAAAAAATTTAAGAACTTAATCGAGTCGCTACGTGATAAAGAGTTTGTATGGCTGTATAAGGCACAGATCCTGAGAGCTTCTAGTTCATTTCTTTATTGGATGTCTCCTACTGTTATATCCGCCGTTGTTTTCCTTGGATGTGCTGTTTCCAAAAGTGCACCATTGAATGCTGAAACCGTTTTCACAGTTCTTGCAACATTGAGGAACATGGGAGAACCATTTAAATTGATCCCAGAGGCTCTTTCCATTATGATTCAGGTGAAAGTTTCGTTTGATCGTCTTAATAACTTTTTGCTTGATGAAGAGATAAACAATGATGATGGCGAAAGAAGCTTGAAGCAATTTTCAGTTAATGCTATGGAAATTCAAGATGGAAACTTCATTTGGGATCATGAATCAGTGTCTCCAACTTTAAGAGATGTTAATATAGAAATCAGGCGGGGACAGAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCTCTTTTGTATTCAATACTAGGAGAGATTCCAAAGATTTCAGGAACTGTTAATGTAGGTGGAACTCTTGCCTATGTTTCTCAGTCTTCTTGGATACAAAGTGGAACAGTTCAAGATAATATACTATTTGGCAAGACCATGGACAAAACAAGATATGAGAAAGCAATTAAAGCTTGTGCCTTAGATAAGGATATCAATGATTTCAGCCATGGTGATCTTACAGAAATAGGTCAGAGAGGGATCAATATAAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGATATTTATCTCCTTGATGATCCTTTTAGTGCAGTTGATGCTCATACAGCTGCAATACTATTCAATGACTGTGTCATGAATGCTTTAAGAGAGAAAACAGTCATTCTAGTTACTCATCAAGTGGAGTTTCTCTCAGAAGTTGATACTATCTTGGTAATGGAGGGTGGAAGAGTTATTCAATCAGGTAGTTATGAGAATATTTTAACATCTGGAACAGCCTTTGAACTACTTGTGAGTGCTCATAAAGACAAAGTTACTGAGTTGAATCGAGATAGTGAAAATAGAGGAGGTTACGAAAATGAGGTTTTGCCTAATCCTCAAGACTCTCATGGTTTTCATCTCACTAAAAATAAAAGTGAGGGAGAGATTTCTAGCATCAAGGATCCAATTGGTACACAACTTACACAAGAGGAAGAAAAAGTGATTGGTAACGTTGGATGGAAGCCATTTTGGGATTATATTAATTATTCCAAAGGGACATCCATGTTGTGTTTAATCATGTTAGCACAATCTGGTTTTATGGCTTTGCAAACTTCATCAACCTATTGGCTTGCTATTGGCATTGAAATTCCAAAAGTAACTAATACCACCTTGATTGGAGTTTATGCATTAATTTCTTTTTCTAGTGCTGCTTTTGTATATTTAAGGTCTTACTTGACTGCACTTTTGGGATTAAAAGCTTCTACTGCTATTTTTTCAAGCTTTACGACAGCTATCTTCAACGCTCCTATGCTTTTCTTTGATTCAACTCCTGTAGGAAGGATTTTAACTAGGGCTTCATCAGATTTGAGTATTTTGGACTTTGATATACCTTATTCCATCACCTTTGTAGCATCAACAGCAATTGAAATTTTGGTGGTAATTTGTATAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGTAATGGTTGCATCAATATACGTTCAGCAATACTATCAAGCCGCTGCAAGGGAACTAATACGGATCAATGGAACCACCAAAGCACCAGTTATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACTGTAAGAGCATTCAACATGGTAGACAGATTTTTCAAAAACTACTTAAAACTTGTGGACACAGATGCTTCATTGTTCTTTCATTCTAATGTGGCGATGCAATGGATGGTTTTAAGGATTGAAGCACTTCAAAACTTGACTGTCATCACAGCAGCTTTGTTGCTTATTCTACATCCTCAGGGATATGTATCACCAGGCCTTGTGGGACTGTCTCTTTCTTATGCTTTTTCCTTGACAGGAGCCCAAGTATTTTGGACTCGATGGTTTAACAACTTGTCAAACTATATTATCTCCGTTGAAAGAATCAAGCAATTCATTCACATACCAGCTGAGCCTCCCGCCATTGTGGATAATAACCGACCTCCATATTCGTGGCCTTCCAAGGGCAAGATTGATCTCCAAGGCTTGGAGATTAGATATCGCCCTAATGCTCCATTAGTCCTTAAGGGAATCACTTGTACTTTTCAAGAAGGAAGTAGGGTAGGAGTTGTTGGAAGGACTGGAAGCGGAAAAAGTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTTCAAAAGGTGATATTCTTATTGATGGAATTAACATATGCTCAATCGGGTTAAAGGATTTGAGAACAAAGCTAAGCATCATTCCGCAAGAACCAACACTTTTCAAAGGCAGCATTAGGACAAATCTGGACCCTCTAGGCCTGTACTCAGATGATGAAATATGGAAGGCTGTAGAGAAATGTCAGCTTAAGGAAACAATCAGCAAGCTACCAAGTCTCTTGGACTCTTCTGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAGCGGCAACTGTTTTGCCTTGGAAGAGTTCTACTTAAAAGAAATAGAATTCTTGTTCTAGATGAAGCAACAGCATCCATTGACTCAGCCACAGATGCAATTCTACAAAGAGTAATTAGACAAGAATTCGAAGAATGCACAGTTATAACTGTGGCTCACAGAGTTCCAACTGTAATAGACAGTGACATGGTTCTGGTCTTATCTTATGGGAAACTGGTGGAATATGATGAGCCTTCAAAGCTAATGGACACAAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGTCTAGTTGCAGGAAGAATTCCCTTCCAAACATTAGCAGACAGCAACAATGA 3891 0.3793 MTYFENENTIGDISEPLLAQKVETKQTGLGHATFLSKLIFSWVNSLLRLGYSKPLDLEDIPSLVSEDEADMAYQKFVRAWESLVRDKTKNNTKSLVLWSIIRTFLKENILIAFYALIRTISAVVSPLILYAFVNYSNRTEADLKQGLSIVGILILTKLVDSLSQRHWFFNSRRSGMKMRSALMVAIYQKQLKLSSSARTRHSAGEIVNYIVVDAYRMGEFPWWFHMAWASALQIVLSIFILFGVVGIGALPGLVPLLICGLLNVPFARILQNCQSQFMISQDERLRSTSEVLNSMKIIKLQSWEKKFKNLIESLRDKEFVWLYKAQILRASSSFLYWMSPTVISAVVFLGCAVSKSAPLNAETVFTVLATLRNMGEPFKLIPEALSIMIQVKVSFDRLNNFLLDEEINNDDGERSLKQFSVNAMEIQDGNFIWDHESVSPTLRDVNIEIRRGQKIAVCGPVGAGKSSLLYSILGEIPKISGTVNVGGTLAYVSQSSWIQSGTVQDNILFGKTMDKTRYEKAIKACALDKDINDFSHGDLTEIGQRGINISGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMNALREKTVILVTHQVEFLSEVDTILVMEGGRVIQSGSYENILTSGTAFELLVSAHKDKVTELNRDSENRGGYENEVLPNPQDSHGFHLTKNKSEGEISSIKDPIGTQLTQEEEKVIGNVGWKPFWDYINYSKGTSMLCLIMLAQSGFMALQTSSTYWLAIGIEIPKVTNTTLIGVYALISFSSAAFVYLRSYLTALLGLKASTAIFSSFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITFVASTAIEILVVICIMVSVTWQVLIVAVPVMVASIYVQQYYQAAARELIRINGTTKAPVMNFAAETSLGVVTVRAFNMVDRFFKNYLKLVDTDASLFFHSNVAMQWMVLRIEALQNLTVITAALLLILHPQGYVSPGLVGLSLSYAFSLTGAQVFWTRWFNNLSNYIISVERIKQFIHIPAEPPAIVDNNRPPYSWPSKGKIDLQGLEIRYRPNAPLVLKGITCTFQEGSRVGVVGRTGSGKSTLISALFRLVEPSKGDILIDGINICSIGLKDLRTKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKAVEKCQLKETISKLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRQEFEECTVITVAHRVPTVIDSDMVLVLSYGKLVEYDEPSKLMDTNSSFSKLVAEYWSSCRKNSLPNISRQQQ* 1297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0455 1296 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 732 994 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr8g0455 1296 SMART AAA_5 451 624 IPR003593 -
Mtr8g0455 1296 SMART AAA_5 1070 1255 IPR003593 -
Mtr8g0455 1296 CDD ABC_6TM_ABCC_D1 110 398 IPR044746 GO:0140359
Mtr8g0455 1296 CDD ABC_6TM_ABCC_D2 726 1019 IPR044726 GO:0140359
Mtr8g0455 1296 Gene3D ABC transporter type 1, transmembrane domain 694 1025 IPR036640 GO:0005524|GO:0016021
Mtr8g0455 1296 Gene3D ABC transporter type 1, transmembrane domain 84 407 IPR036640 GO:0005524|GO:0016021
Mtr8g0455 1296 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 29 1289 - -
Mtr8g0455 1296 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 29 1289 - -
Mtr8g0455 1296 CDD ABCC_MRP_domain1 424 624 - -
Mtr8g0455 1296 Pfam ABC transporter transmembrane region 733 993 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr8g0455 1296 Pfam ABC transporter transmembrane region 109 370 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr8g0455 1296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1033 1277 IPR027417 -
Mtr8g0455 1296 Gene3D - 1027 1278 IPR027417 -
Mtr8g0455 1296 Gene3D - 431 667 IPR027417 -
Mtr8g0455 1296 SUPERFAMILY ABC transporter transmembrane region 97 404 IPR036640 GO:0005524|GO:0016021
Mtr8g0455 1296 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1046 1278 IPR003439 GO:0005524
Mtr8g0455 1296 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 424 647 IPR003439 GO:0005524
Mtr8g0455 1296 CDD ABCC_MRP_domain2 1042 1262 - -
Mtr8g0455 1296 SUPERFAMILY ABC transporter transmembrane region 715 1026 IPR036640 GO:0005524|GO:0016021
Mtr8g0455 1296 ProSitePatterns ABC transporters family signature. 549 563 IPR017871 GO:0005524
Mtr8g0455 1296 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 109 390 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr8g0455 1296 Pfam ABC transporter 1061 1209 IPR003439 GO:0005524
Mtr8g0455 1296 Pfam ABC transporter 442 576 IPR003439 GO:0005524
Mtr8g0455 1296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 422 644 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0455 Mtr-Chr8 5258049 5265096 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0455 424 867 Calmodulin-binding Proteins AT2G36910 21.573 2.44e-18 89.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0455 8 5258049 5265096 Mtr8g0455 8 5258049 5265096 ECH