Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0430 ATGGATGGTCTAAATTGGGATGGCTCACAATTTCAAGAGAACACACCAATCTTGTGGAGTACTCAACACTTTGAAGAAGGCTATAACATATCAAACTCTCTTACTCATCAAATACAAGAGATGCATAAAGTTCAAATTGGAAACACATATTCAAATTCTGAAAGATTGATTCCAAACACAAATCTTTCACAGCATGCAACAAACATGAAAGTGAAATCAAAAGCTGGATCCAGCTGGAGAAAAGAACCTTTAATACCTCAATCATTTCAGTCCCTTTCAGACAGTAGACCTTACAACATTATGCCAGATTTCAACATGGCCCACCAACAACAAAAACTCAACAACTCTTTTGAGTCTTTTGATTGTTTGCTTTCAGGTACTAACAGTAACACAGACACTTCTGTCGAAAATGATAATGATGGAATTTCAAAGCTATTTTCTGACTGCAAAAACTTATGGAACTTCAGTTATGTCAGTAACACAGCAACCTCCTCAGGTGAAACTGATAGTAATGTTTCAAACAGTACAAGCTACGAAGCACTGACACAAACACAGATGCGAACACCAGACACGTCTTCGATCAAAAGTGTCAGTGCTACAGAGGGTACTGGAAACAAAAACATTCAGTGTCCACTCAATGAATTTGATGAAACAATCTCTCAAAGTTCCTCAGATCAATACATCCATCCAAGAAAAGCAATACAATCAAGTACTATTCATAATTCTTCACCTGTTGAAGGTGGTTTTAGACTTATCACTGATAAACCACCAAAATGCAAGAAACCAAGATGTGATAAGGGACCTTGTTCAACTAATATTAATTTTCAACAACCAAATTCATCATCAATGTGCTGTTCTTCTTCAATTGAAGAAGCTGATCCAGAAGCAATAGCACAAATGAAGGAAATGATGTATAGAGCAGCAGCATTTAGACCAGTGAATTTTGGAATGGATGATATTGATGTAATTGAAAAAAAGCCGAAGAGGAAGAATGTAAAGATATCAAATGATCCTCAAACTGTTGCTGCAAGGCATAGAAGAGAAAGAATAAGTGAAAGAATTAGGGTTTTGCAAAAGATTGTACCTGGTGGAAGCAAAATGGACACTGCTTCAATGCTTGATGAAGCTGCAAATTATCTCAAGTTTTTAAGGTCACAGGTTAAGGCACTTGAAAATTTAGGTAACAAAGTTAATGCTATGGATTGTAATCCAACTAGTATTGCTTTCTCTTTTAACCCTTCTTTTCCCATGCAAATGATCCCTAGTAATCACAATCCTCATTCACAGGGTTGA 1293 0.3635 MDGLNWDGSQFQENTPILWSTQHFEEGYNISNSLTHQIQEMHKVQIGNTYSNSERLIPNTNLSQHATNMKVKSKAGSSWRKEPLIPQSFQSLSDSRPYNIMPDFNMAHQQQKLNNSFESFDCLLSGTNSNTDTSVENDNDGISKLFSDCKNLWNFSYVSNTATSSGETDSNVSNSTSYEALTQTQMRTPDTSSIKSVSATEGTGNKNIQCPLNEFDETISQSSSDQYIHPRKAIQSSTIHNSSPVEGGFRLITDKPPKCKKPRCDKGPCSTNINFQQPNSSSMCCSSSIEEADPEAIAQMKEMMYRAAAFRPVNFGMDDIDVIEKKPKRKNVKISNDPQTVAARHRRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENLGNKVNAMDCNPTSIAFSFNPSFPMQMIPSNHNPHSQG* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0430 430 Coils Coil 373 393 - -
Mtr8g0430 430 Gene3D - 339 401 IPR036638 GO:0046983
Mtr8g0430 430 SMART finulus 340 389 IPR011598 GO:0046983
Mtr8g0430 430 PANTHER TRANSCRIPTION FACTOR BHLH87 1 427 - -
Mtr8g0430 430 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 427 IPR045843 GO:0003700|GO:0006355
Mtr8g0430 430 MobiDBLite consensus disorder prediction 182 208 - -
Mtr8g0430 430 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 334 383 IPR011598 GO:0046983
Mtr8g0430 430 Pfam Helix-loop-helix DNA-binding domain 344 383 IPR011598 GO:0046983
Mtr8g0430 430 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 393 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0430 Mtr-Chr8 5018916 5021264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0430 109 426 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.273 2.52e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr8g0430 HLH 3.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0430 - - vra:106773034 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0430 8 5018916 5021264 Mtr8g0430 8 5018916 5021264 ECH