Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0396 ATGGATAAAGGAAAGGTTGGTATTAATATTGTGTTTATTGGTCATGTCGACTCTGGGAAGTCAACCACTGCTGGTCATTTGATCTACAAGCTTGGAGGTATTAAAAAGGATGTCATTGAGCGATTTGAGAAAGAAGCCGCTGAGATAAACATGTGTTCATTCAAATATGCTTGGGTGCTTGACAAGCTCAAGGCTGAGCGTGAAAGAGGTATCACAATCGACATTTCTCTGTCCAAGTTTGAGACAACCAAGTACTACTGCACTCTCATTGATGCCCCCGGACACAGAGATTTCATTAAGAACATGATCACCGGAACATCCCAAGCTGACTGTGCTGTTCTCGTATATGATTCTACTACTATTGGATCTGACTCTGAAACTGCTATTTCTAGGGTTCGTCAGATCCATGAACATGCTGTCCTTGCTTTAACCCTTGGTGTGAAGCAAATGATCTGCTGCTACAACAAGATGGATGCCACTGCACCCAAATACTCCAAGTATAGGTATGAAGAATTTGTGAAAGGTTTTTCACACTTTTTGGAGAGGATTGGCTATAACCCTAAAAAAATTACATTTGTTCCCATCTCTGGTTTTGAGGGAGATAACTTGATTGAGCGTTCTTCTAATCTTGACTGGTACGAGGGTCCCACCCTTCTTGAAGCTCTTGACCAAATCAACGAGCCTAATAGGCCATCAAACAAGCCTCTCCGATTACCACTTCGGGATGTCTACAAGATTGGAGGAATTGGAACTGTGCCTGTGGGATGTGTTGAGACCGGTGTCTTGAAACCTGGAATGATGGTGACTTTTGCCCCGATTGGGCTGCAAGCTGAAGTAAAGTCTGTGCAAATGGACCATACAAATCTCACTGAGGCCCTTCCTGGTGACAATGTGGGATTTAATGTTGAGAATGTGTCTGCTGAGCATCTCAAGCGAGGCTATGTTGTCTCAAACTCCAAGCATGACCCAGCCAAGGAGGCAGATAACTTCATCTCATGTGTTATCATCAGGAATCACCCTGGCCAGATTGGAAATGGCTATACACCTGTTCTTCATTGCCACACCTCCCACACTGCTGTCAAGTTTGATAAGCTTCTAGCCAAGATTGACAGGTGTTCTGGTAAGGTAATTGAGAATGAGCCCAAATTCCTGAAGAATGGTGATGCTGGCATTATTAAGATGATTCCCACCAAGCCCATGGTGGTAGAGACTTTTTCTAATTATCCTTCACTCGGCCGTTTTGCTGTCAGAGACATACGTCGAACAGTGGCTGTTGGAGTCATTAAGGCTGTGAAGAAGAAGGATCCTGGTGCAGGAGGTAGTATCACTAAATCGGCATTGCAGAAGTGA 1350 0.4415 MDKGKVGINIVFIGHVDSGKSTTAGHLIYKLGGIKKDVIERFEKEAAEINMCSFKYAWVLDKLKAERERGITIDISLSKFETTKYYCTLIDAPGHRDFIKNMITGTSQADCAVLVYDSTTIGSDSETAISRVRQIHEHAVLALTLGVKQMICCYNKMDATAPKYSKYRYEEFVKGFSHFLERIGYNPKKITFVPISGFEGDNLIERSSNLDWYEGPTLLEALDQINEPNRPSNKPLRLPLRDVYKIGGIGTVPVGCVETGVLKPGMMVTFAPIGLQAEVKSVQMDHTNLTEALPGDNVGFNVENVSAEHLKRGYVVSNSKHDPAKEADNFISCVIIRNHPGQIGNGYTPVLHCHTSHTAVKFDKLLAKIDRCSGKVIENEPKFLKNGDAGIIKMIPTKPMVVETFSNYPSLGRFAVRDIRRTVAVGVIKAVKKKDPGAGGSITKSALQK* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0396 449 Gene3D Translation factors 231 318 - -
Mtr8g0396 449 Gene3D - 1 228 IPR027417 -
Mtr8g0396 449 SUPERFAMILY Translation proteins 233 324 IPR009000 -
Mtr8g0396 449 CDD EF1_alpha_III 325 428 - -
Mtr8g0396 449 PANTHER TRANSLATION FACTOR 1 447 - -
Mtr8g0396 449 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 435 IPR004539 GO:0003746|GO:0005525|GO:0006414
Mtr8g0396 449 Gene3D Translation factors 325 432 - -
Mtr8g0396 449 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Mtr8g0396 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 232 IPR000795 GO:0003924|GO:0005525
Mtr8g0396 449 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Mtr8g0396 449 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Mtr8g0396 449 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Mtr8g0396 449 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Mtr8g0396 449 PRINTS GTP-binding elongation factor signature 150 159 IPR000795 GO:0003924|GO:0005525
Mtr8g0396 449 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 328 431 IPR009001 -
Mtr8g0396 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 251 IPR027417 -
Mtr8g0396 449 Pfam Elongation factor Tu GTP binding domain 8 224 IPR000795 GO:0003924|GO:0005525
Mtr8g0396 449 CDD EF1_alpha 9 228 - -
Mtr8g0396 449 Pfam Elongation factor Tu C-terminal domain 324 431 IPR004160 -
Mtr8g0396 449 PANTHER ELONGATION FACTOR 1-ALPHA 1 447 - -
Mtr8g0396 449 CDD EF1_alpha_II 232 322 - -
Mtr8g0396 449 Pfam Elongation factor Tu domain 2 250 316 IPR004161 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0396 Mtr-Chr8 4515321 4517649 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0396 1 443 Eukaryotic Initiation Factors Gene Family AT5G60390 77.878 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0396 K03231 - zju:107422504 694.115