Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0392 ATGTGGCAAAGAAGCCACAAGTGTTCTTTAGAGGAGAGGAAGTTGGAGCTTAGACTTGGTCCACCTGGTGAAGAAGAGTTTGTTAATGAAAAAAGCATGAAGAATGTCAAAAAAGAAAGAGATGAAGAATCATCACTCACTCTTGGTTATGCTAAAGATTCATCATTTCTTAAGCTCTCATCAATGCAAGTGATGGATCCATCACAATCACAACCTTGTTGCACAAACTTGCAAGATGGTGAGAAAAATACATTCTCACCTTCTTCTGCAAGAAATTCAGCTTTACCAAACAGGTCTCAGAAAAGAAATGCTGCTAGTCCGGTAGTAGGTTGGCCTCCAATTCGTTCATTCAGAAAGAACATTGCAAGTGGAAGCTCTTCTAAGCCGCCAACTGAGTCCCGACCAATGGTTCAAGACAAGGTTATTGTTGATAGTAACAAACCTATTAGCAACTCTGGTAAAGGCTTGTTTGTGAAGATCAATATGGATGGAGTTCCTATTGGGAGAAAAATAGACATCAATGCTTATGATAGCTATGAAAAACTTTCATCTGCTGTTGATGACCTATTTAGAGGTCTCCTTGAAGAGATAAATTTATCTCATGGAATTAACAAGAAGCAAGAGGAAGAAGATACAGGCATGAAAGGATCATTGACTGGAAGTGGAGAATATACTCTTGTTTATGAAGATAATGAAGGAGACAAGATGCTAGTAGGGGACGTGCCGTGGCACATGTTTGTATCAACAGTGAAGAGGCTGCGTGTGTCCAAGAGTTCTGATCTTCCTGCTTTTAACATTGGTAGCAAGAAAGACTAG 816 0.3971 MWQRSHKCSLEERKLELRLGPPGEEEFVNEKSMKNVKKERDEESSLTLGYAKDSSFLKLSSMQVMDPSQSQPCCTNLQDGEKNTFSPSSARNSALPNRSQKRNAASPVVGWPPIRSFRKNIASGSSSKPPTESRPMVQDKVIVDSNKPISNSGKGLFVKINMDGVPIGRKIDINAYDSYEKLSSAVDDLFRGLLEEINLSHGINKKQEEEDTGMKGSLTGSGEYTLVYEDNEGDKMLVGDVPWHMFVSTVKRLRVSKSSDLPAFNIGSKKD* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0392 271 MobiDBLite consensus disorder prediction 119 133 - -
Mtr8g0392 271 MobiDBLite consensus disorder prediction 119 138 - -
Mtr8g0392 271 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 270 IPR003311 GO:0005634|GO:0006355
Mtr8g0392 271 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 3 270 - -
Mtr8g0392 271 ProSiteProfiles PB1 domain profile. 155 258 IPR000270 GO:0005515
Mtr8g0392 271 MobiDBLite consensus disorder prediction 62 104 - -
Mtr8g0392 271 MobiDBLite consensus disorder prediction 62 111 - -
Mtr8g0392 271 Gene3D - 150 269 - -
Mtr8g0392 271 SUPERFAMILY CAD & PB1 domains 148 256 - -
Mtr8g0392 271 MobiDBLite consensus disorder prediction 25 46 - -
Mtr8g0392 271 Pfam AUX/IAA family 15 261 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0392 Mtr-Chr8 4465663 4469578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0392 158 255 B3 DNA Binding Superfamily AT4G23980 33.673 3.93e-13 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mtr8g0392 AUX_IAA 3e-69 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0392 K14484 - gmx:100793822 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0392 8 4465663 4469578 Mtr2g3541 2 49451937 49456031 ECH
Mtr8g0392 8 4465663 4469578 Mtr8g0392 8 4465663 4469578 ECH
Mtr2g3541 2 49451937 49456031 Mtr8g0392 8 4465663 4469578 PCT