Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0371 ATGGCCTGCAAGGATGGTAATAAGCACTTAATGGATAATGGAAAGTATGTACGTTATACACCTGAGCAGGTTGAAGCTCTTGAAAGGCTTTATCATGAATGTCCTAAACCAAGTTCAATTCGAAGACAACAACTTATTAGAGAATGTCCTATTCTTTCTAATATTGAACCAAGACAAATCAAAGTTTGGTTTCAGAATAGAAGGTGTAGAGAGAAGCAGAGAAAAGAGTCTTTCAGGTTGCAAGGTGTGAATAGGAAGTTGACAGCCATGAATAAGCTGCTGATGGAGGAAAATGATAGGTTGCAGAAGCAGGTGTCTCACCTGGTGTATGAGAATGGCTATTTTCGTCAAAACACCCAAAATGCAACCAAAGACACGAGTTGTGATTCAGTGGTGACTAGTGGTCAGCACAATATGACTAGTCAACATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAAACTTTAGCAGAATTTCTTTCAAAGGCTACTGGAACCGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTCGCTATTTCTCATGGTTGCACTGGTGTCGCAGCAAGAGCTTGTGGTCTAGTGGGACTAGAACCCACTAGGGTTGCGGAAATCCTAAAAGATCGTCCTTTGTGGTTTCGTGATTGCCGAGCTGTTGATATTGTCAATGTGCTGCCCACTGCTAACGGTGGAACTATTGAGCTGCTTTATATGCAGCTTTATGCACCAACCACATTGGCACCTGCTCGTGATTTCTGGTTGTTACGCTACACTTCTGTTGTAGAAGATGGCAGCCTAGTGATCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCTCCTGTGCCGCATTTTGTTAGAGCAGACATGCTGCCTAGTGGGTACCTGATAAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGACTTGGAGCCATGGAGCGTTCCAGAAGTACTGCGTCCACTATATGAATCACCAATGGTGCTGGCTCAGAAGACTACTATGGCGGCTTTACGTCATCTAAGGCAGATTTCGCATGAAGTTTCTCAGCCCAATGTCACTGGGTGGGGAAGACGACCAGCAGCTCTGCGGGCACTTAGCCAGAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGATTTACTGATGAAGGGTGGACAATGATGGGCAATGACGGTGTTGATGATGTCACTATTCTAGTAAATTCATCACCTGACAAGTTAATGGGTCTGAATCTTTCCTTTGGCAATGGATTTCCTTCTGTCAGTAATGCTGTGTTATGTGCCAAGGCATCAATGCTATTACAGAATGTGCCTCCAGCCATTCTCCTAAGGTTCCTGCGTGAACATAGATCAGAATGGGCGGACCATAATATGGATGCTTACACAGCTGCTGCCATTAAAGTTGGCCCTTGCAGCTTAACAGGATCTCGCGTAGGAAATTACGGGGGTCAAGTGATTCTCCCGCTAGCACACACTATTGAGCATGAGGAGTTTTTGGAAGTTATTAAGTTGGACGGAGTTGCCCATTCTCCTGAAGAAATGATGGCCAGAGAATTGTTTCTGTTGCAACTCTGCAGTGGAATGGATGAGAATGCTATTGGCACCTGTGCAGAACTTATATTTGCTCCAATTGATGCTTCATTTGCTGATGATGCCCCACTTCTACCCTCTGGGTTTCGTATCATCCCTCTTGAATCTGGAAAAGAATCGTCCAGTCCTAATCGCACTCTTGATCTTGCATCTGCCCTTGACATTGGCCCTACTGGAAACCGAGCATCAAGTGATAATGCTGGAAATTCTGGCTGTGTGAGATCTGTGATGACAATAGCATTTGAATTTGCATATGAAAGTCATATGCAAGAGAATGTAGCATGCATGGCACGCCAATATGTTCGCAGTATTATATCATCAGTCCAAAGGGTAGCGTTAGCACTTTCTCCTTCTAATCTGAGTTCACATGCTGGGCTGAGGTCACCGCTAGGTACCCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTATAGATGCTACTTAGGCGTGGAGCTACTTAAATCTAATACTGAAGGAAAAGAATCTGTACTCAAGTCCTTGTGGCACCACTCTGATGCTGTATTATGCTGCACTCTAAAGGCAATGCCAGTGTTCACTTTCTCAAACCAGGCAGGGCTTGACATGCTGGAGACTACGCTTGTTGCATTACAAGATATAAGTCTGGAGAAAATATTTGATGATAATGGTCGAAAAACTCTCTTTTCGGAGTTCCCCCAGATTATTCAACAGGGTTTTGCATGTCTGCAAGGTGGTATTTGTCTCTCAAGCATGGGACGACCTGTCTCATACGAGAGAGCTGTTGCTTGGAAGGTGCTGAATGATGAACAGAATGCTCATTGTATTTGCTTTATGTTTGTGAACTGGTCTTTTGTTTGA 2499 0.447 MACKDGNKHLMDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPRQIKVWFQNRRCREKQRKESFRLQGVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYFRQNTQNATKDTSCDSVVTSGQHNMTSQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDIVNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVVEDGSLVICERSLKNTQNGPSMPPVPHFVRADMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESPMVLAQKTTMAALRHLRQISHEVSQPNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTMMGNDGVDDVTILVNSSPDKLMGLNLSFGNGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADHNMDAYTAAAIKVGPCSLTGSRVGNYGGQVILPLAHTIEHEEFLEVIKLDGVAHSPEEMMARELFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLESGKESSSPNRTLDLASALDIGPTGNRASSDNAGNSGCVRSVMTIAFEFAYESHMQENVACMARQYVRSIISSVQRVALALSPSNLSSHAGLRSPLGTPEAQTLAHWICNSYRCYLGVELLKSNTEGKESVLKSLWHHSDAVLCCTLKAMPVFTFSNQAGLDMLETTLVALQDISLEKIFDDNGRKTLFSEFPQIIQQGFACLQGGICLSSMGRPVSYERAVAWKVLNDEQNAHCICFMFVNWSFV* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0371 832 CDD bZIP 67 106 - -
Mtr8g0371 832 Gene3D - 8 79 - -
Mtr8g0371 832 MobiDBLite consensus disorder prediction 125 149 - -
Mtr8g0371 832 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 832 IPR044830 GO:0003700
Mtr8g0371 832 SUPERFAMILY Homeodomain-like 14 76 IPR009057 -
Mtr8g0371 832 CDD homeodomain 15 75 IPR001356 GO:0003677
Mtr8g0371 832 Pfam START domain 156 364 IPR002913 GO:0008289
Mtr8g0371 832 Coils Coil 84 104 - -
Mtr8g0371 832 SUPERFAMILY Bet v1-like 155 365 - -
Mtr8g0371 832 CDD START_ArGLABRA2_like 150 365 - -
Mtr8g0371 832 SMART START_1 155 365 IPR002913 GO:0008289
Mtr8g0371 832 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 832 - -
Mtr8g0371 832 MobiDBLite consensus disorder prediction 125 145 - -
Mtr8g0371 832 Gene3D - 190 369 IPR023393 -
Mtr8g0371 832 SMART HOX_1 12 78 IPR001356 GO:0003677
Mtr8g0371 832 ProSiteProfiles START domain profile. 146 360 IPR002913 GO:0008289
Mtr8g0371 832 ProSiteProfiles 'Homeobox' domain profile. 10 74 IPR001356 GO:0003677
Mtr8g0371 832 Pfam MEKHLA domain 689 831 IPR013978 -
Mtr8g0371 832 Pfam Homeodomain 15 73 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0371 Mtr-Chr8 4231285 4238446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0371 1 784 Homeobox Transcription Factor Family AT1G52150 83.165 0.0 1369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr8g0371 START 1.4e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0371 K09338 - gmx:100800165 1555.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0371 8 4231285 4238446 Mtr8g0371 8 4231285 4238446 ECH
Mtr2g3555 2 49617454 49625398 Mtr8g0371 8 4231285 4238446 PCT