Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0367 ATGACACAATCAACAACAACCTCTTCAACATCTTCACAAGAATCACCACCAACACATTCCATTCAGAAACAAAGTCCAACACGGCCCAAAAGGCCCAGAGACGACGACAACAACGACAACAACAACAAACATCCAACTTATCATGGAGTAAGAAAACGAAACTGGGGAAAATGGGTATCTGAAATCCGCGAACCACGCAAAAAATCAAGAATCTGGCTAGGAACATTCTCAACACCAGAAATGGCAGCTAGAGCACACGATGTAGCAGCTTTAACCATCAAAGGAAAAACCGCAATTCTCAATTTTCCTCATTTATCAAACATGCTTCCAAGACCAGCAACATCAGCACCACGTGACATTCAAGCCGCAGCAACCGCTGCAGCTGCTATGGTTGACTTTGATGACCCTGTCATGCACGTGACAAGTTGTTCTGAATCTGAATCTGTTGAAGAACTTAGTCAAATTGTTGAACTTCCTAAAATTAATGAAGAAGATGAAGATGACTCAGTTGATAGTACTTGGGTTTATCATCATCCTTCTCCGTTAATTGGGTTTGAAGGAATTGAATTCTATGCTACTTTTTCTGATGATTTTTTGTTACCACTTTGGGATTAA 615 0.4065 MTQSTTTSSTSSQESPPTHSIQKQSPTRPKRPRDDDNNDNNNKHPTYHGVRKRNWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGKTAILNFPHLSNMLPRPATSAPRDIQAAATAAAAMVDFDDPVMHVTSCSESESVEELSQIVELPKINEEDEDDSVDSTWVYHHPSPLIGFEGIEFYATFSDDFLLPLWD* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0367 204 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Mtr8g0367 204 MobiDBLite consensus disorder prediction 1 51 - -
Mtr8g0367 204 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 197 - -
Mtr8g0367 204 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Mtr8g0367 204 MobiDBLite consensus disorder prediction 1 25 - -
Mtr8g0367 204 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Mtr8g0367 204 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Mtr8g0367 204 MobiDBLite consensus disorder prediction 27 46 - -
Mtr8g0367 204 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Mtr8g0367 204 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Mtr8g0367 204 Pfam AP2 domain 46 95 IPR001471 GO:0003700|GO:0006355
Mtr8g0367 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 197 - -
Mtr8g0367 204 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0367 Mtr-Chr8 4163155 4164168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0367 11 171 AP2-EREBP Transcription Factor Family AT5G11590 50.838 2.53e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr8g0367 AP2 2.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0367 K09286 - gmx:100804056 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0367 8 4163155 4164168 Mtr8g0367 8 4163155 4164168 ECH