Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0358 ATGGAAAACCGTCAAAGAATAACACTTTACGATCAAATGACATCCACGAGCAACACTCGTAGCTCACTAGCTAGTTTAATCCAAAACGACGCCGTTTTATCCAACCAAAAAAACACAAACCAAACACTCTTAGATATTATACGAGAAAACGAACCAAACAACGTTGTTGTTAATGTTAGTGTTACCAACAGCAGCAGCAGCAGCAACAACAACGTTGTTAAAGATCGAAAATCATGGAAAGCTTTTAAGGAATTACTTCTTTTCAAACGTCGTACCTCGGATGAATCAACTCACCAACAACAACAAAACGAAGATATTCCGACCAATTCAGATCCGTCGGAATTTCTTCCCGGCGGCGAGTTTTCCGATGAGACGGCACAGGTTAGCATGTCGTTGATGGATTTGTTGGAAGAGAGTGAAATTGAATTGGAACGAATTAGTGATGTTGTTGATGAAGGTGATGACGTGGAAGAGAATAATGAGAAACGAGAAGAAGAAGAAGAAAGAGAAGAAGAAGGAGAAGGAGAAGGGAGTAATGTTAAGGTGGAACACAATTGTTGCGTGTGTATGGTGAGGGATAAAGGTGCAGCGTTTATACCATGTGGACACACGTTTTGCAGGATGTGTTCAAGAGAGCTTTGGGTTAGTAGAGGGAATTGTCCTCTTTGCAATCATTTTATTTTAGAAGTTCTTGATATTTTCTGA 705 0.4 MENRQRITLYDQMTSTSNTRSSLASLIQNDAVLSNQKNTNQTLLDIIRENEPNNVVVNVSVTNSSSSSNNNVVKDRKSWKAFKELLLFKRRTSDESTHQQQQNEDIPTNSDPSEFLPGGEFSDETAQVSMSLMDLLEESEIELERISDVVDEGDDVEENNEKREEEEEREEEGEGEGSNVKVEHNCCVCMVRDKGAAFIPCGHTFCRMCSRELWVSRGNCPLCNHFILEVLDIF* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0358 234 MobiDBLite consensus disorder prediction 144 177 - -
Mtr8g0358 234 SUPERFAMILY RING/U-box 185 230 - -
Mtr8g0358 234 MobiDBLite consensus disorder prediction 91 121 - -
Mtr8g0358 234 Coils Coil 156 176 - -
Mtr8g0358 234 CDD RING-HC 186 223 - -
Mtr8g0358 234 Pfam Zinc finger, C3HC4 type (RING finger) 183 228 - -
Mtr8g0358 234 PANTHER OS01G0917900 PROTEIN 2 112 - -
Mtr8g0358 234 PANTHER OS01G0917900 PROTEIN 123 234 - -
Mtr8g0358 234 SMART ring_2 186 223 IPR001841 -
Mtr8g0358 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 234 IPR013083 -
Mtr8g0358 234 MobiDBLite consensus disorder prediction 144 173 - -
Mtr8g0358 234 ProSiteProfiles Zinc finger RING-type profile. 186 224 IPR001841 -
Mtr8g0358 234 PANTHER OS01G0917900 PROTEIN 2 112 - -
Mtr8g0358 234 PANTHER OS01G0917900 PROTEIN 123 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0358 Mtr-Chr8 4069994 4071209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0358 3 234 C3H Transcription Factor Family AT3G25030 37.262 8.37e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0358 - - cam:101511225 252.292