Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0345 ATGGCTGTTCCAAAAGTGAATGAAAAGTTGATTGAAGACCTTGAAGAAATGGGATTTCCACATGCAAGGGCAACAAGAGCACTCTATTATTCTGGCAACACCAGCTTAGAGGATGCTATATCTTGGATGGTTGATCATGAGAATGACACAGATATTGATGAGATTCCATTGGTAGATGTAGACATTGATATTGATACCTCTCCATCATTCCCTATTACAGAAGAAATGAGAATGAAAGCACAGTATTTAAGGGAACAAATGCGCGAGAGGAAAAAGAATGAAGAAAAAATAATGGAAAGAGAAAGGGAAAAGGAGAGGATTCAATCAGGTAAGAAACTCCTTGAGGCAAAGCGGATTGCAGAAGAAAATGAAAGAAAACGGAATTTATCCTTGAGAAAAGCAGAAAAAGAAGAAGAACAAAGAGCTAGGAGTGACATCCTCAAGAAGCTAGAGCAGGATAAGTTAAATAGAAGGTCTATACTTGGATTACCTTTAGAAAGTCAAGCAAATGTGAGATCACCAGCCATTGTGATAAAGCAAGAAAAGATTTCAAAGCCTGTTTATACAACCACAAAAGTTGAGCACTTAAGAGAATGTTTGAGGTCTCTCAAGCGTGAACACAAGGGTGAGGATGCAAGAATCAGAAGGGCCTTTGAAACACTTCTAGTGTATGTTGGAAATGTTGTCAAGAATCCTAATGAAGAAAAATACAGGAAGATTAGACTGAGCAATCCATTATTCCAAGATAGAGTTGGAAGTTTATATGGAGGTGTAGAGTTTCTTGAGCTATGTGGTTTTGAGAGAACGGGTGATTTCTTGTATCTTCCTAGTGAAAAGGTTGACATGGAACTACTAAGTTCAGCTGGTTTTGTCTTAAATTCTGCAATGACAAATCCTTACTTTGGACTTTTAAGTACTTGCTAA 924 0.3755 MAVPKVNEKLIEDLEEMGFPHARATRALYYSGNTSLEDAISWMVDHENDTDIDEIPLVDVDIDIDTSPSFPITEEMRMKAQYLREQMRERKKNEEKIMEREREKERIQSGKKLLEAKRIAEENERKRNLSLRKAEKEEEQRARSDILKKLEQDKLNRRSILGLPLESQANVRSPAIVIKQEKISKPVYTTTKVEHLRECLRSLKREHKGEDARIRRAFETLLVYVGNVVKNPNEEKYRKIRLSNPLFQDRVGSLYGGVEFLELCGFERTGDFLYLPSEKVDMELLSSAGFVLNSAMTNPYFGLLSTC* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0345 307 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Mtr8g0345 307 PANTHER PUB DOMAIN-CONTAINING PROTEIN-RELATED 1 306 - -
Mtr8g0345 307 Coils Coil 119 140 - -
Mtr8g0345 307 MobiDBLite consensus disorder prediction 88 109 - -
Mtr8g0345 307 CDD PUB_UBA_plant 200 304 - -
Mtr8g0345 307 CDD UBA_PUB_plant 6 53 - -
Mtr8g0345 307 SMART PGNneu 216 277 - -
Mtr8g0345 307 Gene3D - 8 53 - -
Mtr8g0345 307 Pfam PUB domain 214 281 IPR018997 -
Mtr8g0345 307 Coils Coil 83 108 - -
Mtr8g0345 307 Gene3D - 193 294 - -
Mtr8g0345 307 Pfam UBA/TS-N domain 7 42 IPR015940 -
Mtr8g0345 307 PANTHER F13M7.16 PROTEIN 1 306 - -
Mtr8g0345 307 SUPERFAMILY PUG domain-like 190 300 IPR036339 -
Mtr8g0345 307 SUPERFAMILY UBA-like 5 56 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0345 Mtr-Chr8 3946473 3950235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0345 1 304 C2H2 Transcription Factor Family AT1G04850 57.468 1.90e-100 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0345 K24348 - gmx:100781260 462.225