Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0306 ATGGAAAACCAATTCTTTTTAAATGCTGGATTTGAACCTTACCAAACCCAAGATTGTTTTTTCAACCCAAATTGGGACAAGTCAACGGACCAAAACCTTAACTATGATTCAACACTTAGTTCAATTGTCTCATCCCCAGCAGCTACATCATCACCATCAAATCCCAACATGTCCAATGAAAATTTTGTCATGAGAGAATTAATAGGAAAATTGGGAACTTTTGGTGAGATCTCACAACATTCTTCTAACCCTTTGGTTCTACCAATGATGTCTAGAGTGGCAGAATTTTCACCTGATCCTGGTTTTGTTCAAAGGGCTGCAAAATTTTCTTGCTTTGGTAGCAAGAGTTTCAATGAAAGAGGTAACCAAATGGTGATGAACAATGTTGAATTAGCTCAAAGATCTCATAATTTAATGGAAAATGGAATGAAGTTATCAAGAGTTTCAAGTAGTCCATCACTCAAAACATTTGGATCTCAAATGGTTAATCATGAGAACAAGAATTCTTCATTGCAACAAGAAAATGAGAAAATGGAAGTGGCTAATTCTCAAGAAGAATCTACAATATCTGAGCAAAATACACCAAATGGTGAAATTGGTGTCAAAGCTTCACCTGATATGAATTCAAGGAAAAGAAAAGCTTCTTCTTCCAAAGGAAAAGCACCAAACTCTACCAATCCTACGAAGGGTGTTGAAGGTAGTGGTGAAGACTTCAATGCAAAGAAAATTAAGGCAAATGAGGGTGAGAGAAATGAAAATGGTGTCAGGAATATGGAGGAAGAGATCAAAGAAGGTACACCAAATGCAGGGGAAGAAAAACAGAACAAGAGTGACTCAAAACCTCCTGAACCTCAAAAAGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCTACTGACAGTCACAGTCTTGCAGAACGAGTAAGGAGGGAGAAAATAAGTGAGAGGATGAAACTTCTCCAAGATCTTGTACCAGGTTGCAATAAGGTTACTGGAAAAGCACTTATGCTTGATGAAATTATAAATTATGTTCAGTCATTGCAGCGTCAAGTTGAGTTTTTGTCTATGAAATTGTCTTCAGTGAACACAAAGATGGATTTAAGTATTGAAAGTCTTGTTGTATCAAAAGATATATTTCAATCAAATAATTCTTTGCAAAACTCAATATTCCAATTAGATTCCTCGGTACCATCCTTTTATGGGCAACAACCCCAGCAAAACCAAGCTATTCATAATAACATCCCTAATACAAATGGGTCCCACTGCTCAGTGGAACCATTGGATTCTTCTTTGTGCCATAATATTGGCATGCATTTACCTTTCCTAAATGGATTTAATGAAGGTGGCTCTCAGCAGTATCCATTAACATTCTCTGAGGAGGACTTAAACACCGTTGTTCAGATGGGATTTGGCCAAACTTCAAACAGGAATACACCAATACACTCCCCAAGTTTCAACGGTTCAAATCAATCAACACAAATGAAAATTGAGCTCTAA 1497 0.3701 MENQFFLNAGFEPYQTQDCFFNPNWDKSTDQNLNYDSTLSSIVSSPAATSSPSNPNMSNENFVMRELIGKLGTFGEISQHSSNPLVLPMMSRVAEFSPDPGFVQRAAKFSCFGSKSFNERGNQMVMNNVELAQRSHNLMENGMKLSRVSSSPSLKTFGSQMVNHENKNSSLQQENEKMEVANSQEESTISEQNTPNGEIGVKASPDMNSRKRKASSSKGKAPNSTNPTKGVEGSGEDFNAKKIKANEGERNENGVRNMEEEIKEGTPNAGEEKQNKSDSKPPEPQKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTKMDLSIESLVVSKDIFQSNNSLQNSIFQLDSSVPSFYGQQPQQNQAIHNNIPNTNGSHCSVEPLDSSLCHNIGMHLPFLNGFNEGGSQQYPLTFSEEDLNTVVQMGFGQTSNRNTPIHSPSFNGSNQSTQMKIEL* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0306 498 Coils Coil 161 188 - -
Mtr8g0306 498 MobiDBLite consensus disorder prediction 473 498 - -
Mtr8g0306 498 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 297 347 IPR011598 GO:0046983
Mtr8g0306 498 MobiDBLite consensus disorder prediction 218 232 - -
Mtr8g0306 498 Gene3D - 294 369 IPR036638 GO:0046983
Mtr8g0306 498 PANTHER BHLH TRANSCRIPTION FACTOR 13 86 - -
Mtr8g0306 498 PANTHER BHLH TRANSCRIPTION FACTOR 88 491 - -
Mtr8g0306 498 SMART finulus 303 353 IPR011598 GO:0046983
Mtr8g0306 498 Pfam Helix-loop-helix DNA-binding domain 301 348 IPR011598 GO:0046983
Mtr8g0306 498 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 295 366 IPR036638 GO:0046983
Mtr8g0306 498 CDD bHLH_AtBPE_like 287 372 - -
Mtr8g0306 498 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 88 491 IPR024097 GO:0006355
Mtr8g0306 498 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 13 86 IPR024097 GO:0006355
Mtr8g0306 498 MobiDBLite consensus disorder prediction 167 285 - -
Mtr8g0306 498 MobiDBLite consensus disorder prediction 235 285 - -
Mtr8g0306 498 Coils Coil 344 364 - -
Mtr8g0306 498 MobiDBLite consensus disorder prediction 167 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0306 Mtr-Chr8 3364256 3367942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0306 1 451 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 41.317 1.80e-92 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr8g0306 HLH 3.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0306 - - gmx:100801233 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g1191 7 25258520 25262090 Mtr8g0306 8 3364256 3367942 PCT