Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0285 ATGAGGCCAAACGCTTCGGCGATGAGACAAGCCGAACTTTTGCGAAACGACGGTAACAATTACTTCAAGAAAAACCGTTTTAATGCCGCCATCGATGCTTACACTGAGGCAATTACGCTTTGCCCTAATGTTCCCGTTTATTTCACCAATCGTGCTTTGTGTCATCTCAAACGAAATGAATGGGAGAGGGTTGAGGAAGATTCTAGAAGAGCAATTCAGCTGGACAGTCATTCTGTTAAGGCACACTATATGTTGGGTCTTGCATTGCTACAGAAACAAGAACATACGAAAGGAATCCGAGAATTGCAAAAGGCTTTGGATCTTGGGAGAGGTGCCAATCCAAAGGGCTATATGGTTGAAGAAATATGGCAAGAGTTTGCAAAGGCAAAATACAAGGAGTGGGAACGTTCATCGTCCCAACGATCATGGGAATTGCAGAACTTGAAAGAAGCTTGTAAGTCTGCTCTAAAGGAAAAACATTTTCTTGGCTCTGAAATGGAAGGATTTGTAGATGATGCTACTACTTCCCATTTGAAACAGTTGGAGGCTGTAGAAAGAGTCTTCAATAAAGCTGCAGATGATGACATACCAACTGAGGTCCCTGATCATCTATGCTGCAGAATAACTCTTGATATTTTTCATGATCCTGTCATTACTCCTAGTGGACATACATATGAGAGAGCAGTGATTCTTGACCATCTTCAGAAGGTTGGTGAATTTGATCCGATCACGAGGGAACCACTTGATCCATCCCAACTAGTATCAAACTTGGCCATTAGGGAAGCAGTCCATGAATATTTGGACACACATGGGTGGGCTTACAAGATAGATTAA 834 0.4233 MRPNASAMRQAELLRNDGNNYFKKNRFNAAIDAYTEAITLCPNVPVYFTNRALCHLKRNEWERVEEDSRRAIQLDSHSVKAHYMLGLALLQKQEHTKGIRELQKALDLGRGANPKGYMVEEIWQEFAKAKYKEWERSSSQRSWELQNLKEACKSALKEKHFLGSEMEGFVDDATTSHLKQLEAVERVFNKAADDDIPTEVPDHLCCRITLDIFHDPVITPSGHTYERAVILDHLQKVGEFDPITREPLDPSQLVSNLAIREAVHEYLDTHGWAYKID* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0285 277 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Mtr8g0285 277 SUPERFAMILY TPR-like 10 108 IPR011990 GO:0005515
Mtr8g0285 277 SUPERFAMILY RING/U-box 193 274 - -
Mtr8g0285 277 SMART Ubox_2 203 266 IPR003613 GO:0004842|GO:0016567
Mtr8g0285 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 4 276 IPR045200 GO:0000209|GO:0061630
Mtr8g0285 277 SMART tpr_5 45 78 IPR019734 GO:0005515
Mtr8g0285 277 SMART tpr_5 79 112 IPR019734 GO:0005515
Mtr8g0285 277 SMART tpr_5 11 44 IPR019734 GO:0005515
Mtr8g0285 277 PANTHER OS08G0113300 PROTEIN 4 276 - -
Mtr8g0285 277 CDD RING-Ubox_CHIP 200 266 IPR045202 -
Mtr8g0285 277 Pfam U-box domain 200 272 IPR003613 GO:0004842|GO:0016567
Mtr8g0285 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 276 IPR013083 -
Mtr8g0285 277 Pfam Tetratricopeptide repeat 80 108 IPR019734 GO:0005515
Mtr8g0285 277 Pfam Tetratricopeptide repeat 18 43 IPR019734 GO:0005515
Mtr8g0285 277 Gene3D Tetratricopeptide repeat domain 4 141 IPR011990 GO:0005515
Mtr8g0285 277 ProSiteProfiles U-box domain profile. 199 273 IPR003613 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0285 5 276 U-box Gene Family AT3G07370 67.033 1.56e-134 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0285 K09561 - gmx:100796519 461.07