Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0276 ATGGATCTCAATGATTGGGTTTCCACAAATCCTCCACCACTACACCTGTTTTTGATATTTGGTAATAGAGACTTTTCTAGCAGTGGCATATTGCACCGGTTAAGAATGTGCAACTACAATATCTTGCTTGCATGTCCCGGAAGGGCTCATGTTGCTGCTCTCTGCCATGCAGCAACTATAATGTGGGAGTGGTCTTCCATGCTCAAGGGGGATGACCTTACAGGAAAACATTTCAACTATCCTCCTGATGGTCCCACTTATTCATGGTATGAAAACTCAAATGTGCCTCTTGAAAACCCCTTCTCAGTTGTTGAGTTGCACACATCTTCACAAAATTCGGAGGAGGAGATATACAAACCTACCTTGGACAAAAAGTTAAGTCAAGCTTCAAAATCATTTTCTAGCCAGGTTATGAAAATATTGTGTTCGCATCCAAATGGGATCTCCATAGGAGATCTTCGTGCAGAGTTGACAAACTGTGATATGCCTTTGGTTAAACGTTTCTATGGAAATAAAAAGTTTTCCAACTTCCTAATATCTATGTCATATGTACAACTCCAGTATTTAGGAGGAAATAATTTTTGGGTTTGTTTGGTCCCATCAACGACATCTGCTGTTAAGAATAACCAGAACGATGGTGCCGCAACTCAAAAGTTGCCCAATGACGGTAAAAATATGGATAGAAGTGCAGACGGGGTTCCCAAAATATCCTCATCGTGTGTTAACAGTGAGGGTGATGATTTAAAATCATTCCAATCTATCCCTTCACAAGGAAAACCTCTCGGGGAATACGCTGATGGTAAATCATCAACTCCTTTGTTCATGGACAGTATTGTGCATCAGCCTCCAAATGAGTTGCAGAAAAAATCTTTAGAGTTGGATGTGGCCCGTGCACCATTGCCGCAGATTCAACTTCTTCCAGATGACAACAATATTTCCAAAAAATCTGACAATGACGTTGTTAAGTCTGATGATGGAAATCCTGAAATTCTTGAAAAAATAATCCCTTCACAGAATCCGTCTACTTCTAATGATTGCACCATATTGGAAAACAACCATGAGATTCCAACTAGAAAGGAGGTTGATGAAGTTTGTCGTAGCCCATTTACTTCAACTTTCTGTAGTTGGATTAGTAGTTGGTGGACATTTTGGAAAAGCAATGCTAAGTCCGAAATAGACCATAGTGCTAGTCATTTTGAAGAGCCCAAGTCATCAGAACTGCAACAGGATCTTAGTCATCCTCTGCAACCTCATTGGGATAACTTTAAATTTAGGGTTGCAGTATGGTGGGACTTTGATAGCTGTGGCGTCCCCTCCGGCATTAGCTTTTTGAATGTAGCACCTTCAATTATGGGAGTTCTTAGAGCCAACGGGATTAAGGGCCCAATTCATATTGACGCTTATGGCGATGTTTCTCAACTTTCACAGATCAAACAAGAAGCATTTTTCCAATCTGGCATTGTTCTCCACCACATTCCAGGTGGAAAGAACAAGAGCAAATGCTTTGTGGATTGGTTTTCTCAAAATCCCTCCTCGCCCATGCACCTCTTTTTGATATCTGGTGATAAAGACATAAACTTCTCCTGCATATTGGTTCGAAACTATCATAGGAGGAACTATCATAGGAGGAACGAGAACCTCTTGCTTGCATGTCCAGGAAAGGCTGAAGATTGTGTCAGCAGAAGAGCATTTATAGTATGGCGGTGGTCTTCAGTGCTCAAGGGGAAATATCTTACTGGAAAATATTTCTGTTATCCTCCTGAGTGGTATGTTAAGGCGCGGGTGCCTCTTGAATATCCTCCAGAGTGGTATAGAAACTGGAAGGTGCGTCCTAAAAATCCCTTCTTAGCTGCTGAGGAGCCCACATCTTCACAAAATGCAGAGATCCATATACCTTCCTCGTTTTCTTGTGAAGGTCAAAGGGTACAGTATAGGCCGGTTAGGGAGGTATTGAGTTCGTACCCTAATGGAATCCCCGTCGGAGAACTTAAGATGAGATTGGGTATCTCTGGTGATACAAAAAGGTTTTCCCAAGTGATAGCATCTATACCACAAGTGCAACTCTTGTATATAGGAGATGATAATTTTTGTGTACGTTTGATCCCATCAACAACATCTACCGTTAAGAAGAAGAAGCAGAGGGTTGCCGATCATTCAGAAATGCGTGAGTTATTTTCTACTGATTCTTTTGGGGATGATGTGGAAACTTTTGTTTTCTCATCTAGAGGATCACGTCTTATTTCCCGATCAAGAAGCAGGGAGGATCTGGCTCATAGATTACAAAGGCATGGACCCATGATTTTTATGTCTCTCACCGAAAATGAAATCCTTCAATTGGTGGAATTGTTGATAACAAAGTTGAAATGGTTGAAGGAAAGCCCTTCAGAAGTATTTCCTTTTATTCTAACTCAATCTGTTGGGCTAACTATGCCCTAA 2436 0.4117 MDLNDWVSTNPPPLHLFLIFGNRDFSSSGILHRLRMCNYNILLACPGRAHVAALCHAATIMWEWSSMLKGDDLTGKHFNYPPDGPTYSWYENSNVPLENPFSVVELHTSSQNSEEEIYKPTLDKKLSQASKSFSSQVMKILCSHPNGISIGDLRAELTNCDMPLVKRFYGNKKFSNFLISMSYVQLQYLGGNNFWVCLVPSTTSAVKNNQNDGAATQKLPNDGKNMDRSADGVPKISSSCVNSEGDDLKSFQSIPSQGKPLGEYADGKSSTPLFMDSIVHQPPNELQKKSLELDVARAPLPQIQLLPDDNNISKKSDNDVVKSDDGNPEILEKIIPSQNPSTSNDCTILENNHEIPTRKEVDEVCRSPFTSTFCSWISSWWTFWKSNAKSEIDHSASHFEEPKSSELQQDLSHPLQPHWDNFKFRVAVWWDFDSCGVPSGISFLNVAPSIMGVLRANGIKGPIHIDAYGDVSQLSQIKQEAFFQSGIVLHHIPGGKNKSKCFVDWFSQNPSSPMHLFLISGDKDINFSCILVRNYHRRNYHRRNENLLLACPGKAEDCVSRRAFIVWRWSSVLKGKYLTGKYFCYPPEWYVKARVPLEYPPEWYRNWKVRPKNPFLAAEEPTSSQNAEIHIPSSFSCEGQRVQYRPVREVLSSYPNGIPVGELKMRLGISGDTKRFSQVIASIPQVQLLYIGDDNFCVRLIPSTTSTVKKKKQRVADHSEMRELFSTDSFGDDVETFVFSSRGSRLISRSRSREDLAHRLQRHGPMIFMSLTENEILQLVELLITKLKWLKESPSEVFPFILTQSVGLTMP* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0276 811 CDD PIN_limkain_b1_N_like 425 552 - -
Mtr8g0276 811 Gene3D - 128 198 IPR041966 -
Mtr8g0276 811 Pfam OST-HTH/LOTUS domain 131 193 IPR025605 -
Mtr8g0276 811 MobiDBLite consensus disorder prediction 209 232 - -
Mtr8g0276 811 PANTHER LIMKAIN B LKAP 401 707 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mtr8g0276 811 PANTHER LIMKAIN B LKAP 1 403 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mtr8g0276 811 PANTHER LIMKAIN B LKAP 712 807 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mtr8g0276 811 ProSiteProfiles OST-type HTH domain profile. 129 200 IPR025605 -
Mtr8g0276 811 PANTHER EMB|CAB71880.1 712 807 - -
Mtr8g0276 811 PANTHER EMB|CAB71880.1 401 707 - -
Mtr8g0276 811 PANTHER EMB|CAB71880.1 1 403 - -
Mtr8g0276 811 Pfam NYN domain 425 534 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0276 Mtr-Chr8 3021686 3025997 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0276 1 70 C2H2 Transcription Factor Family AT5G61190 48.571 2.34e-10 62.4