Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0248 ATGTTTCCTCTTTTTCTACCTTCTCGTCTTTCTCGCAAGGTTTTTACTAGGTTTAAAGGGCGTGGGTTCTCATCATCATCTTCTTCTTCTCCTCCCGAGGTTTCAGTATGGTGGCACCTTGACAGCTGTCCCGTGCCCTCAGGGTTTAGCTTTTCCAAGGTAGCACCTTCAATTACGGCAGCCGTTAGAGCTAACGGAATTATGGGTACAATTCATATTCACGCTTATGGTGATGTCGACAAAGAGGCTTTTAATTCAACCAACATTACTCTACACTCCTTTTCCGACGATTACCCTTTTGGCATTCACAAAAGATATAAGGATACAAAGAACAATACCTATAAGCATTTTCTTATGGATCTCAATGACTGGGTTTCCACAAATCCTCCACCACTACACCTGTTTTTGATATTTGGTAATAGAGACTTTTCTAGCAGTGGCATATTGCACCGGTTAAGAATGTGCAACTACAATATCTTGCTTGCATGTCCCGGAAGGGCTTATGTTGCTGCTCTCTGCCATGCAGCAACTATAATGTGGGAGTGGTCTTCCATGCTCAAGGGGGATGACCTTACAGGAAAACATTTCAACTATCCTCCTGATGGTCCCACTTATTCATGGTATGAAAACTCAAATGTGCCTCTTGAAAACCCCTTCTCAGTTGTTGAGTTACACACATCTTCACAAAATTCGGAGGAGGAGATATACAAACCTACCTTGGACATAAAGTTAAGTCAAGCTTCAAAATCATTTTCTAGCCAGGTTATGAAAATATTGTGTTCGCATCCAAATGGGATCTCCATAGGAGATCTTCGTGCAGAGTTGACAAACTGTGATATGCCTTTGGTTAAACGTTTCTATGGAAATAAAAAGTTTTCCAACTTCCTAATATCTATGTCATATGTACAACTCCAGTATTTAGGAGGAGATAATTTTTGGGTTTGTTTGGTCCCATCAACGACATCTGCTGTTAAGAATAACCAGAACGATGGTGCCGCAACTCAAAAGTTGCCCAATGACGGTAAAAATATGGATAGAAGTGCAGACGGGGTTCCCAAAATATCCTCATCGTGTGTTAACAGCGAGGGTGATGATTTAAAATCATTCCAATCTATCCCTTCACAAGGAAAACCTCTCGGGGAATACGCTGATGGTAAATCATCAACTCCTTTGTTCATGGACAGTATTGTGCATCAGCCTCCAAATGAGTTGCAGAAAAAATCTTTGGAGTTGGATGTGGCCTGTGCACCATTGCCGCAGATTCAACTTCTTCCAAATGACAACAATATTTCCAAAAAATCTGACAATGACGTTGTTAAGTCTGATGATGGAAATCCTGAAATCCTTGAAAAAATAATCCCTTCACAGAATCCGTCTACTTCTAATGATTGCACCATATTGGAAAACAACCATGAGATTCCAACTAGAAAGGAGGTTGATGAAGTTTGTCGTAGCCCATTTACTTCAACTTTCTGTAGTTGGATTAGTAGTTGGTGGACATTTTGGAAAAGCAATGCTAAGTCCGAAATAGACCATAGTGCTAGTCATTTTGAAGAGCCCAAGTCATCAGAACTGCAACAGGATCTTAGTCATCCTCTGCAACCTCATTGGGATAACTTTAAATTTAGGGTTGCAGTATGGTGGGACTTTGACAGCTGTGGCGTCCCCTCCGGCATTAGCTTTTTGAATGTAGCACCTTCAATTATGGGAGTTCTTAGAGCCAACGGGATTAAGGGCCCAATTCATATTGACGCTTATGGGACAAGAAGCATTTTTCCAATCTGGCATTGTTCTCCACCACATTCCAGGTGGAAAGAACAAGAGCAAATGCTTTGCGGATTGGTTTTCTCAAAATCCCTCCTCACCCATGCACCTCTTTTTGATATCTGGTGA 1893 0.4136 MFPLFLPSRLSRKVFTRFKGRGFSSSSSSSPPEVSVWWHLDSCPVPSGFSFSKVAPSITAAVRANGIMGTIHIHAYGDVDKEAFNSTNITLHSFSDDYPFGIHKRYKDTKNNTYKHFLMDLNDWVSTNPPPLHLFLIFGNRDFSSSGILHRLRMCNYNILLACPGRAYVAALCHAATIMWEWSSMLKGDDLTGKHFNYPPDGPTYSWYENSNVPLENPFSVVELHTSSQNSEEEIYKPTLDIKLSQASKSFSSQVMKILCSHPNGISIGDLRAELTNCDMPLVKRFYGNKKFSNFLISMSYVQLQYLGGDNFWVCLVPSTTSAVKNNQNDGAATQKLPNDGKNMDRSADGVPKISSSCVNSEGDDLKSFQSIPSQGKPLGEYADGKSSTPLFMDSIVHQPPNELQKKSLELDVACAPLPQIQLLPNDNNISKKSDNDVVKSDDGNPEILEKIIPSQNPSTSNDCTILENNHEIPTRKEVDEVCRSPFTSTFCSWISSWWTFWKSNAKSEIDHSASHFEEPKSSELQQDLSHPLQPHWDNFKFRVAVWWDFDSCGVPSGISFLNVAPSIMGVLRANGIKGPIHIDAYGTRSIFPIWHCSPPHSRWKEQEQMLCGLVFSKSLLTHAPLFDIW* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0248 630 CDD PIN_limkain_b1_N_like 34 164 - -
Mtr8g0248 630 PANTHER EMB|CAB71880.1 516 587 - -
Mtr8g0248 630 PANTHER EMB|CAB71880.1 8 521 - -
Mtr8g0248 630 MobiDBLite consensus disorder prediction 327 349 - -
Mtr8g0248 630 Gene3D - 246 316 IPR041966 -
Mtr8g0248 630 Pfam NYN domain 34 176 IPR021139 GO:0004540
Mtr8g0248 630 ProSiteProfiles OST-type HTH domain profile. 247 318 IPR025605 -
Mtr8g0248 630 PANTHER LIMKAIN B LKAP 8 521 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mtr8g0248 630 PANTHER LIMKAIN B LKAP 516 587 IPR024768 GO:0005777|GO:0010468|GO:1903231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0248 Mtr-Chr8 2757575 2762505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0248 538 596 C2H2 Transcription Factor Family AT5G61190 34.921 9.82e-06 47.0