Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0221 ATGGAGGAAAAAATCATAGAACACAAAAGTGTTACAACAAAGCTTGTAAAGTCTAGTTTCATGTCTTCTCTGCCAAAAAGTGTTACAATCTCATTTACTGATAACTATGCCACTGACTCTTCAACTGAAGATGAAGAACAACATGTGATAACAACAAGGAAAATAGTGAACGAGGTAAGATTTCAACAATGTTCCACTCTTTCTAACAAGAACAACAAAAAAAGACAAGAAGAGACAAAAAACAAGAATGCTGTTGTTGTTTGTTTGGAACAAAACAATGAGAACCCTAGACAAATAAATGATGTTGTTCATCAAAAGTTTCGCGGCGTTCGACGACGACGATGGGGGAGATTTGCTGCTGAGATTCGTGATCCAAGGCTTGGTAGGAGAAGGTGGTTAGGGACATATGATACCGCTGAAGAAGCTGCTTTGGTTTATGATAGAGCTGCAATTGATTGTAGAGGTGCTGATGCTGTTACAAATATCATCAAACCACCACAGAAGAAAAGATCAGTGAAAGATGAATTTGTTTGTGACAGAAATGGATATTTTGGTGATAATGTGTCTGTTGAGGATTGTAATGGTAGTTCATCTTATTCTCAAGAATCTGTGAGTGAAATTTGGAGTGAAAGGATGAATGATCAAGAATGGATAAAAGAGATAACTGGAGAGGAATATTTGGATGATGGTTTTACATTTGTTGATGAATCATATGGTTCTTGTTCTTATTATGAACCTGTTCTTCCTACAATGGTTTCTAATGAGAGTGATTGCATTGTTGATACTATTCCTTTTCATCTTGAGGAGGATTTTGAATCATGTGAATGGGAGGTTAATAATTACTTCAATGAATCTTTGGAGTTTTGA 867 0.3587 MEEKIIEHKSVTTKLVKSSFMSSLPKSVTISFTDNYATDSSTEDEEQHVITTRKIVNEVRFQQCSTLSNKNNKKRQEETKNKNAVVVCLEQNNENPRQINDVVHQKFRGVRRRRWGRFAAEIRDPRLGRRRWLGTYDTAEEAALVYDRAAIDCRGADAVTNIIKPPQKKRSVKDEFVCDRNGYFGDNVSVEDCNGSSSYSQESVSEIWSERMNDQEWIKEITGEEYLDDGFTFVDESYGSCSYYEPVLPTMVSNESDCIVDTIPFHLEEDFESCEWEVNNYFNESLEF* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0221 288 SUPERFAMILY DNA-binding domain 106 162 IPR016177 GO:0003677
Mtr8g0221 288 CDD AP2 118 161 IPR001471 GO:0003700|GO:0006355
Mtr8g0221 288 Pfam AP2 domain 106 151 IPR001471 GO:0003700|GO:0006355
Mtr8g0221 288 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 285 - -
Mtr8g0221 288 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Mtr8g0221 288 Gene3D AP2/ERF domain 105 163 IPR036955 GO:0003700|GO:0006355
Mtr8g0221 288 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 4 285 - -
Mtr8g0221 288 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Mtr8g0221 288 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Mtr8g0221 288 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0221 Mtr-Chr8 2528634 2529500 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0221 4 167 AP2-EREBP Transcription Factor Family AT4G27950 41.143 9.64e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr8g0221 AP2 2.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0221 - - mtr:MTR_8g010340 576.244