Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0220 ATGGTTTTTGTTCCAAGTAGCCGGATTTTGAGTTCTTATGTTTTTGTTAGTTTCTTGTTGCTGATTAGTTTTGGTATAACCTATGGGACTGAAACTGATATCTTCTGTTTGAAAAGTATAAAAAATTCGATTCAAGACCCGAATAATTATTTGACATCTTCATGGAATTTCAACAATAAAACTGAAGGGTTTATATGTAGATTTAATGGTGTTGAATGCTGGCATCCTGATGAGAATAAAGTCTTGAATCTCAAATTATCAAATATGGGACTCAAGGGTCAGTTTCCTCGGGGCATTGTTAATTGTTCGAGCATGACAGGATTAGATCTTTCAGTCAACGACCTATCTGGAACCATTCCAGGAGATATATCGACGCTCCTAAAATTTGTGACGTCGCTTGATCTATCTTCAAATGAATTTTCTGGGGAGATACCTGTTAGTCTTGCAAATTGTACTTATCTGAATGTCCTTAAACTTAGTCAGAACCAACTCACCGGTCAAATTCCTTTACTATTAGGCACTCTCGATCGTATTAAGACATTCGACGTATCCAACAATCTTTTGACCGGGCAAGTTCCAAACTTTACTGCTGGTGGTAAAGTTGATGTAAATTATGCAAATAATCAAGGTCTTTGTGGACAACCTTCATTAGGGGTTTGCAAGGCTACGGCTTCCTCCAAGAGTAACACTGCAGTTATAGCTGGAGCTGCTGTTGGTGCGGTGACTCTTGCAGCGTTAGGATTGGGCGTTTTTATGTTCTTCTTTGTGCGTCGCAGTGCTTATAGGAAGAAGGAAGAAGATCCTGAAGGAAACAAATGGGCAAGAAGTCTTAAAGGAACTAAAGGAATTAAGGTATCTCTATTTGAGAAGTCAATTTCAAAAATGAAATTGAGTGATCTCATGAAGGCTACCAACAACTTCAGTAATATCAATATCATTGGGACAGGAAGAACAGGAACAGTTTACAAAGCTACCCTTGAGGACGGCACAGCATTTATGGTGAAAAGATTGCAGGAATCTCAACACTCCGAGAAAGAGTTTATGTCTGAGATGGCGACACTAGGGACTGTCAAACATCGTAATCTGGTTCCACTTTTAGGTTTTTGTGTGGCCAAAAAGGAGAGGCTTTTGGTCTTTAAAAACATGCCGAATGGAATGCTCCATGATCAACTACATCCTGCTGCCGGTGAGTGCACACTTGACTGGCCTTCGAGACTCAAAATCGCAATTGGAGCAGCCAAAGGATTTGCATGGCTTCATCATAGCTGCAACCCTCGCATCATCCACCGAAACATAAGCTCTAAGTGTATCTTGTTGGACGCAGATTTTGAGCCCAAAATTTCCGATTTCGGCCTTGCCAGATTGATGAACCCGCTCGATACGCATTTAAGTACTTTCGTAAATGGGGAGTTCGGCGATTTTGGTTATGTGGCTCCTGAGTATACAAAAACCTTGGTTGCTACGCCTAAAGGCGATGTTTTTAGCTTTGGGACTGTGCTTCTTGAGTTGGTGACCGGCGAAAGACCTGCAAATGTGGCTAAAGCACCAGAAACTTTTAAAGGAAATCTCGTAGAATGGATTACGGAGCTTTCAAGCAACTCAAAACTCCACGATGCCATCGACGAGTCACTTCTCAACAAAGGTGATGACAACGAGCTTTTCCAATTTTTAAAGGTTGCATGCAACTGTGTTACAGAAGTTCCAAAGGAGAGACCAACCATGTTTGAAGTATATCAGTTTTTAAGAGCTATTGGTGGTAAGTACAATTTCCAAACTGAAGATGAAATATTGGTACCTGAAGATATTATTGGTGATAATAACATGGTGGAACTTATTGTTGCTAGAGAAGGAAAATAA 1857 0.4039 MVFVPSSRILSSYVFVSFLLLISFGITYGTETDIFCLKSIKNSIQDPNNYLTSSWNFNNKTEGFICRFNGVECWHPDENKVLNLKLSNMGLKGQFPRGIVNCSSMTGLDLSVNDLSGTIPGDISTLLKFVTSLDLSSNEFSGEIPVSLANCTYLNVLKLSQNQLTGQIPLLLGTLDRIKTFDVSNNLLTGQVPNFTAGGKVDVNYANNQGLCGQPSLGVCKATASSKSNTAVIAGAAVGAVTLAALGLGVFMFFFVRRSAYRKKEEDPEGNKWARSLKGTKGIKVSLFEKSISKMKLSDLMKATNNFSNINIIGTGRTGTVYKATLEDGTAFMVKRLQESQHSEKEFMSEMATLGTVKHRNLVPLLGFCVAKKERLLVFKNMPNGMLHDQLHPAAGECTLDWPSRLKIAIGAAKGFAWLHHSCNPRIIHRNISSKCILLDADFEPKISDFGLARLMNPLDTHLSTFVNGEFGDFGYVAPEYTKTLVATPKGDVFSFGTVLLELVTGERPANVAKAPETFKGNLVEWITELSSNSKLHDAIDESLLNKGDDNELFQFLKVACNCVTEVPKERPTMFEVYQFLRAIGGKYNFQTEDEILVPEDIIGDNNMVELIVAREGK* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0220 618 Pfam Protein tyrosine and serine/threonine kinase 310 581 IPR001245 GO:0004672|GO:0006468
Mtr8g0220 618 Gene3D Transferase(Phosphotransferase) domain 1 382 600 - -
Mtr8g0220 618 PANTHER LRR RECEPTOR-LIKE KINASE 4 595 - -
Mtr8g0220 618 ProSiteProfiles Protein kinase domain profile. 307 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g0220 618 PANTHER RECEPTOR-LIKE PROTEIN 55 4 595 - -
Mtr8g0220 618 CDD STKc_IRAK 313 581 - -
Mtr8g0220 618 SUPERFAMILY Protein kinase-like (PK-like) 285 581 IPR011009 -
Mtr8g0220 618 Pfam Leucine rich repeat N-terminal domain 32 74 IPR013210 -
Mtr8g0220 618 SUPERFAMILY L domain-like 31 198 - -
Mtr8g0220 618 Gene3D Ribonuclease Inhibitor 31 222 IPR032675 -
Mtr8g0220 618 Gene3D Phosphorylase Kinase; domain 1 268 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0220 Mtr-Chr8 2479835 2483748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0220 8 595 Receptor kinase-like Gene Family AT3G28450 45.700 5.43e-179 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Mtr8g0220 PK_Tyr_Ser-Thr 1.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0220 - - gmx:100801294 931.013