Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0166 ATGGATACTACATTTACACCACCGTCACCACACCGTTCATCTCCGTTACAAAACATAAGCCCTAGCATTCTCATCATTATAACAATCCTCGCCGTCACCGTCATCGTTTCTCTTCTAATCTGCTTCCTCCTCCGCCACCTCAACTGTCACCGTCTCCGCCGTAATCCATCTCCAACAACCACCGAACCTCCTCCTCACACTCACAGCCGTCGTATCTCTCCAGAAACAACACCTCCCTCCGTCATCGACTCACTCCCTCTCTTCACATTCTCATCCATCTCCCGTCGTTCCTCCGCCGTCACCGCCGCTGACTGCGCTGTCTGTTTATCAAAGTTCCGTAACTCCGACCTCCTCCGTTCTCTTCCTCTCTGTTGCCACGCTTTCCATGCTGAATGCATTGACACATGGCTCCGTTCAAATCTTTCATGTCCGTTATGTCGCGCCAGCATTCTCCCTTCCGATTCTGATCTCGCAAAAATTCTCCGATCAACTTCTTCAGACAGTTTCCGAGTTGATATCGGAAATATAAGCCGCCGTGGAAACAATCTTCCCAATCCCGACGCCGTTACTACCGGTGGCGATTCAAGGTCTTATTCGATTGGATCGTTTGAGTATTATGTAGTTGAGCCTTCGGAGGTTTCGTTTACGCAAGATCACCGGAGAAGTGTTTCCGATCAGAAAGACATTCACATTCCGGTATCGGAGGATTCATCTATGACACATGAAAATACTATCGCTGGTGAAGTTGCTGGAAGTGGACATTGGTTGAAGGATTACGTGGACAGACTATCGGCTTCGATTTCATCGCGAACGGCGTCGTTTCGGAGTTCTGGAAGATTCTTCGCCGGAGGTGGAAGTAGTCGCAGAATTGAACCGGTTGATTATGACGTTGAAGGTAACAGAATTGGTGAAGAGATTAGTGAAATGTTTCGGTGGCTTTCAGGGGTATGA 951 0.4858 MDTTFTPPSPHRSSPLQNISPSILIIITILAVTVIVSLLICFLLRHLNCHRLRRNPSPTTTEPPPHTHSRRISPETTPPSVIDSLPLFTFSSISRRSSAVTAADCAVCLSKFRNSDLLRSLPLCCHAFHAECIDTWLRSNLSCPLCRASILPSDSDLAKILRSTSSDSFRVDIGNISRRGNNLPNPDAVTTGGDSRSYSIGSFEYYVVEPSEVSFTQDHRRSVSDQKDIHIPVSEDSSMTHENTIAGEVAGSGHWLKDYVDRLSASISSRTASFRSSGRFFAGGGSSRRIEPVDYDVEGNRIGEEISEMFRWLSGV* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0166 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 152 IPR013083 -
Mtr8g0166 316 MobiDBLite consensus disorder prediction 64 79 - -
Mtr8g0166 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 7 301 - -
Mtr8g0166 316 CDD RING-H2_PA-TM-RING 104 147 - -
Mtr8g0166 316 Pfam Ring finger domain 104 147 IPR001841 -
Mtr8g0166 316 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Mtr8g0166 316 SUPERFAMILY RING/U-box 81 153 - -
Mtr8g0166 316 SMART ring_2 105 146 IPR001841 -
Mtr8g0166 316 MobiDBLite consensus disorder prediction 54 79 - -
Mtr8g0166 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 7 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0166 Mtr-Chr8 1923894 1925261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0166 68 160 C3H Transcription Factor Family AT3G18930 47.000 1.22e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0166 K10663 - gmx:100776516 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0166 8 1923894 1925261 Mtr8g0166 8 1923894 1925261 ECH