Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0154 ATGGGTTATGATAAATCTCACTTTTATTTGGATGAAGATAAGTTTCAAAGAGAGATTGTGCAACATCAACCAAGTTTCTCTTTTGAGAGTGGTAATTCTCAATCTTCAACCATACAATATATGAATAATATTGTTGACAATGTTTGTGTCACCAACACAGTTCATGAGAACATTGCTCAAGAATATACTTGTGCTACTAATTCACAACAATTACCACCTTCTCAATACATTTTATCTTTTGAAAACTCAACTATGCAACCTTCTCCTAATAGTGACATTGCAACATGTTCTTCTATCATGGTTCAAGAAACAACAACATTGAATAACAATGTGAGTAGTGAATTACCAAAGATAATTAAGAAAAGAACTAAGAATCTTAGAAGCTCTTGTGAGATGCAAGATCACATTATGGCTGAGAGAAAAAGGAGACAAGTTCTTACTGAAAGGTTCATAGCACTGTCTGCCACTATACCTGGATTGAAGAAGACTGGTAAGGTCTACATACTTCAAGAAGCTATCAATTATGTGAAACAACTTCAAGAAAGGGTAAAAAAGCTAGAGAAGGAAGTACCTAGGGTTGAAGCAAGGGTCATAGACAAGGAAATTCTCATTGGAATCCATTGTGAGAAACAAAAGGATATTGTGGTCAGATTAATGGCTTTGCTTCAAAATCTTCATCTTTCTGTTGCTAGTCGTAGCAGCGTATTGCCTTTTGGAAGTTCCACTCTAAAAGTTACAATCATTGCTCAGGTTGTTGAGTGCATGAATATGTTTGGGCACATTCACCCTTTGAGCTAA 798 0.3546 MGYDKSHFYLDEDKFQREIVQHQPSFSFESGNSQSSTIQYMNNIVDNVCVTNTVHENIAQEYTCATNSQQLPPSQYILSFENSTMQPSPNSDIATCSSIMVQETTTLNNNVSSELPKIIKKRTKNLRSSCEMQDHIMAERKRRQVLTERFIALSATIPGLKKTGKVYILQEAINYVKQLQERVKKLEKEVPRVEARVIDKEILIGIHCEKQKDIVVRLMALLQNLHLSVASRSSVLPFGSSTLKVTIIAQVVECMNMFGHIHPLS* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0154 265 Coils Coil 169 196 - -
Mtr8g0154 265 SMART finulus 136 185 IPR011598 GO:0046983
Mtr8g0154 265 Gene3D - 131 203 IPR036638 GO:0046983
Mtr8g0154 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 196 IPR036638 GO:0046983
Mtr8g0154 265 PANTHER BHLH TRANSCRIPTION FACTOR 188 257 - -
Mtr8g0154 265 PANTHER BHLH TRANSCRIPTION FACTOR 1 189 - -
Mtr8g0154 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Mtr8g0154 265 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 188 257 - -
Mtr8g0154 265 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 189 - -
Mtr8g0154 265 Pfam Helix-loop-helix DNA-binding domain 134 180 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0154 Mtr-Chr8 1844938 1848263 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0154 132 251 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 37.427 2.64e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr8g0154 HLH 5.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0154 - - mtr:MTR_8g009020 328.946