Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0117 ATGCCTCCAAAGACGCCAAAGAGAGGTTCAGCGGGTAGTGGTTCAAAGAGGGGTGGCAGATTATCGAGAGGAACTGCGAAATCTGCGCAGAATCAACAACAGCAGCAATCTGAACTTGTTGAAGAGAAGACGGTGATTGAGGAAGAGATCAAGGTTGAAGAGAATCTTGTTGTCGAGGAAAAGCCTGTGGTGGAAGAAGATAATCCTGTTGTTGAAGATAAAGCTATTGATATGAATCAAATTGCTCCTGAGGCTGTAGAAGATGCTAATTCTGCGAAAAATGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAGAGAGACGAGCGTCTAGATTTGGAGGATAATGATCCTGAGTATGAACCTGAGGAGTATGGTGGGGTTGACTATGATGAGAAGGAAATTGAACAGGAAGAGGGACATGAGGTGGGAGATGAAGTTGAGGAAGAACCTGAAGAAAATGTTGTTGAAGAAGGTGATTCAGGTGAGGAAGAAGTCGAAGATGGTCATGATGAAATTGAGGGAGAAGAGGATGACGAGCATGCTGATGAGGAGCATGACCGTGAGCGTGCGGAGATGGCTGATGTGGATGAAGAGGAACATCGTGAAGTTGTGAAGGAGAGGCGAAAGCGGAAAGAATTTGAAGTATTTGTTGGGGGCCTAGACAAGGATGCTACTGAAGATGATCTGAGGAAGGTTTTCAGTGAAGTTGGGGTTGTGACTGAGGTCAGGCTGATGATGAATCCTCAGACAAAAAAGAACAAGGGATTTGCATTCTTGCGGTTTGAAAATGTGGAACAAGCAAAACGAGCTGTAGCAGAGCTTAAAAACCCAGTGATTAATGGAAAACAATGTGGTGTTACTCCGAGTCAGGACAGTGATACCCTCTATTTGGGAAACATATGCAAAACATGGACAAAGGAAGCTTTAAAGGAGAAGCTGAAGCATTATGGAGTTACAAATGTTGAGGATATAACTTTGGTAGAAGATTCTAATGATAAAGGAACAAACCGTGGATTTGCATTCTTGGAATTTTCCTCCCGCTCAGATGCAATGGATGCCTTTAAGAGACTGCAGAAGAGGGATGTTACGTTTGGAGTTGATAAGCCTGCAAAGGTTTCATTTGCAGATTCTTTTATTGACCCGGGTGATGAAATTATGTCACAGGTTAAAACTGTATTTATTGATGCACTTCCTCCTTCATGGGATGAAGATTATGTCCGGAATCTTCTCAAGAAATATGGTGAGGTTGAAAAGATTGAGCTTGCAAGGAACATGCCAGCTGCTCGTAGAAAGGACTATGGATTTGTTACCTTTGGCTCACACGATGCTGCTATAAGATGTGCTGACAGCATTACTGGTACAGAATTGGGTGAAGGCGACAAAAAGGCCAAAGTGAGGGCTAGGTTATCAAGGCCACTTCAGAGAGGCCGTGGAAAACATGTTGGTCGTGGGGACTATCGCCCGAGTCGCGGATCTGCAATAATGTCAAGGCCTTCTTGGAGCAGCCGACCTGCTCCTCGTAGTTTCTCGTCGCGTGGGGTAAGAGGAATTGGAAGTCGTGCTCCGCCAATCAGGTCTATTAGTGCTAGAGATAGACGCCCTGTCATGTCTATACCAGTTAGAAGTAGGCCACTACCTCCTCCAGCTAGATCTTATGATAGAAGACCAGCTGATGCTGCATATTCAAAAAGCAGCGTGAAGAGAGATTATGGTCGGCGTGATGATCTACCACCTCCAAGAAGTAGAGTTGCTGTAGATTATGGATCAAGGATGACCTCTGAAAGACGCCCAACTTATAGGGATTATCCACCTCGTGGATCTGACTACTCTGATCCCCCTAGAAGTACAGCTCGTGCTGCACCTAGGAGAGGTTATGTGGATGATGGTTACAGCCAAAGGTATGAGAGGCCACCTCCTCCTCCACCCCCTTCCCATCCAAGTTATCGCGAGGGACGCCCTCGTGATTATGATTCTCTATCTGGCTCAAAACGTTCTTACGCTGCCGTGGATGATGTTCCCCCAAGATACGCCGATACTGGTGCTCGCCAATCAAGAGCTCGATTGGAGTATGACTATGGTGGCAGTGCTTCACAGTATGGTGATGCTTATGGTGATAGAGTTGGAAGATCTAGTCTTGGATATGGTAGTGGCAGCCGAAGTTCTATTTCTGGTCAAGATTCACATGGGGTGTATAGCAGTCGGCAGGGCATGAGTTATGGTGGAGGCTCTTATGGCGGTAGTGATGTTGGAGGCATGTACTCATCAAGTTATGGCGGTGATTACGTTTCTCGTGGAAATGATGTTGGCGGCAGCTCATATTCATCTATGTATTCTGGCAGGGGTGCGGGTGGCGGTAGCAGTTACATGGGAAGCGGTGGTTCAGGATCTTATTATTGA 2400 0.4592 MPPKTPKRGSAGSGSKRGGRLSRGTAKSAQNQQQQQSELVEEKTVIEEEIKVEENLVVEEKPVVEEDNPVVEDKAIDMNQIAPEAVEDANSAKNEEEVKESIDEYERDERLDLEDNDPEYEPEEYGGVDYDEKEIEQEEGHEVGDEVEEEPEENVVEEGDSGEEEVEDGHDEIEGEEDDEHADEEHDRERAEMADVDEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCADSITGTELGEGDKKAKVRARLSRPLQRGRGKHVGRGDYRPSRGSAIMSRPSWSSRPAPRSFSSRGVRGIGSRAPPIRSISARDRRPVMSIPVRSRPLPPPARSYDRRPADAAYSKSSVKRDYGRRDDLPPPRSRVAVDYGSRMTSERRPTYRDYPPRGSDYSDPPRSTARAAPRRGYVDDGYSQRYERPPPPPPPSHPSYREGRPRDYDSLSGSKRSYAAVDDVPPRYADTGARQSRARLEYDYGGSASQYGDAYGDRVGRSSLGYGSGSRSSISGQDSHGVYSSRQGMSYGGGSYGGSDVGGMYSSSYGGDYVSRGNDVGGSSYSSMYSGRGAGGGSSYMGSGGSGSYY* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0117 799 MobiDBLite consensus disorder prediction 495 509 - -
Mtr8g0117 799 MobiDBLite consensus disorder prediction 184 207 - -
Mtr8g0117 799 Coils Coil 29 49 - -
Mtr8g0117 799 Gene3D - 383 498 IPR012677 -
Mtr8g0117 799 MobiDBLite consensus disorder prediction 715 735 - -
Mtr8g0117 799 MobiDBLite consensus disorder prediction 1 43 - -
Mtr8g0117 799 MobiDBLite consensus disorder prediction 89 106 - -
Mtr8g0117 799 SUPERFAMILY RNA-binding domain, RBD 215 359 IPR035979 GO:0003676
Mtr8g0117 799 CDD RRM_SF 296 363 - -
Mtr8g0117 799 CDD RRM_SF 216 287 - -
Mtr8g0117 799 MobiDBLite consensus disorder prediction 773 799 - -
Mtr8g0117 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 292 IPR000504 GO:0003723
Mtr8g0117 799 MobiDBLite consensus disorder prediction 107 183 - -
Mtr8g0117 799 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 799 - -
Mtr8g0117 799 CDD RRM_SF 393 467 - -
Mtr8g0117 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 391 473 IPR000504 GO:0003723
Mtr8g0117 799 MobiDBLite consensus disorder prediction 24 40 - -
Mtr8g0117 799 SUPERFAMILY RNA-binding domain, RBD 385 493 IPR035979 GO:0003676
Mtr8g0117 799 SMART rrm1_1 215 288 IPR000504 GO:0003723
Mtr8g0117 799 SMART rrm1_1 295 374 IPR000504 GO:0003723
Mtr8g0117 799 SMART rrm1_1 392 467 IPR000504 GO:0003723
Mtr8g0117 799 Gene3D - 295 377 IPR012677 -
Mtr8g0117 799 MobiDBLite consensus disorder prediction 472 684 - -
Mtr8g0117 799 MobiDBLite consensus disorder prediction 557 581 - -
Mtr8g0117 799 MobiDBLite consensus disorder prediction 83 207 - -
Mtr8g0117 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 393 458 IPR000504 GO:0003723
Mtr8g0117 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 362 IPR000504 GO:0003723
Mtr8g0117 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 284 IPR000504 GO:0003723
Mtr8g0117 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 378 IPR000504 GO:0003723
Mtr8g0117 799 Gene3D - 141 294 IPR012677 -
Mtr8g0117 799 PANTHER RNA RECOGNITION MOTIF 1 799 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0117 Mtr-Chr8 1356875 1363310 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0117 216 457 Eukaryotic Initiation Factors Gene Family AT4G34110 23.228 7.15e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0117 - - gmx:100779340 986.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0117 8 1356875 1363310 Mtr8g0117 8 1356875 1363310 ECH
Mtr8g0117 8 1356875 1363310 Mtr7g0167 7 2765446 2774605 PCT