Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0060 ATGGGTGAGAAAGATGATGAATTTAGTTTGGGTTTAAGCTTGAGTTTAGGATTTGGAGAATATGCAAATAACAACAACCAAACTCCTTTGAAGGTGAGTCACATGCACAAGCCTCCTCAAACGGTTACAAACCAAAGGGTTTCATTCAATAACTTGTTCCATTTTCATGATCTAAGCACTGAAACGAGGTCGTTTCTCCGCGGAATAGACGGCAACACTCCACTACCATCAACGGCGGCGACGGCCGCCGCATTCGACGATGAAAACGGAGTTTCATCACCGAACAGCACTGTGTCAAGCATCAGTGGAAAGAGAAGTGAAAGAGAAGGAAACGGAGATGAAAACGACGCTGTTGAAAGGGGTTCATGTTCTCGCGGCGGCGGAAGTGATGATGATGACGGTGGAGGTTGCGGCGGCGACGGTGATTCGTCGAGGAAGAAGCTGAGGTTGTCGAAGGAGCAGTCAATGTTGTTGGAAGAAACTTTCAAGGAGCATAATACTCTGAATCCGAAACAAAAGCAAGCATTGGCAAAGCAGTTGAATCTGAAGCCAAGACAAGTTGAGGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGTTGAAGCAAACTGAAGTGGATTGTGAGTACTTGAAGAGATGCTGTGAGACTCTAACTGATGAGAATAGGAGGTTGCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAGTTATCTCCACAACTCTACATGCAAATGAATCCTCCCACCACTCTCACAATGTGCCCTTCGTGTGAGCGTGTTGCCGTGTCATCCGCATCCTCCTCATCAGCAGCTGCTGCTCCTCCCTCTGCTTCAGCCAACCCGTCCGGCCCAAGTGTTCAACGGCCAACACCTGTCAACCCTTGGGCATCAATGTCCATCCAAAATCGTTCCCGACCATGA 918 0.4782 MGEKDDEFSLGLSLSLGFGEYANNNNQTPLKVSHMHKPPQTVTNQRVSFNNLFHFHDLSTETRSFLRGIDGNTPLPSTAATAAAFDDENGVSSPNSTVSSISGKRSEREGNGDENDAVERGSCSRGGGSDDDDGGGCGGDGDSSRKKLRLSKEQSMLLEETFKEHNTLNPKQKQALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTDENRRLQKEVQELRALKLSPQLYMQMNPPTTLTMCPSCERVAVSSASSSSAAAAPPSASANPSGPSVQRPTPVNPWASMSIQNRSRP* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0060 305 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 7 299 - -
Mtr8g0060 305 SMART halz 201 244 IPR003106 GO:0006355|GO:0043565
Mtr8g0060 305 MobiDBLite consensus disorder prediction 84 147 - -
Mtr8g0060 305 ProSiteProfiles 'Homeobox' domain profile. 141 201 IPR001356 GO:0003677
Mtr8g0060 305 Pfam Homeobox associated leucine zipper 201 235 IPR003106 GO:0006355|GO:0043565
Mtr8g0060 305 SMART HOX_1 143 205 IPR001356 GO:0003677
Mtr8g0060 305 ProSitePatterns 'Homeobox' domain signature. 176 199 IPR017970 GO:0000981|GO:0006355
Mtr8g0060 305 Gene3D - 137 206 - -
Mtr8g0060 305 SUPERFAMILY Homeodomain-like 129 202 IPR009057 -
Mtr8g0060 305 Pfam Homeodomain 145 199 IPR001356 GO:0003677
Mtr8g0060 305 CDD homeodomain 145 202 IPR001356 GO:0003677
Mtr8g0060 305 PANTHER - 7 299 - -
Mtr8g0060 305 MobiDBLite consensus disorder prediction 88 105 - -
Mtr8g0060 305 MobiDBLite consensus disorder prediction 264 305 - -
Mtr8g0060 305 Pfam HD-ZIP protein N terminus 1 109 IPR006712 GO:0005634
Mtr8g0060 305 MobiDBLite consensus disorder prediction 106 120 - -
Mtr8g0060 305 Coils Coil 214 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0060 Mtr-Chr8 747966 750890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0060 16 302 Homeobox Transcription Factor Family AT3G60390 60.269 4.63e-104 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr8g0060 HD-ZIP_N 5.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0060 K09338 - gmx:100810641 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0060 8 747966 750890 Mtr8g0060 8 747966 750890 ECH