Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0044 ATGCATGGGAAAAAAGATCAAGAGCATGTAAGGAAAGGTCCATGGAAAACAGAAGAAGATGAAGTGTTACTTCATCATGTGAAGAAGTATGGTCCAAGAGATTGGAGCTCCATTCGATCCAAAGGTCTTCTTCAAAGAACTGGCAAGTCTTGTCGTCTTCGTTGGGTCAATAAACTTCGACCTAACCTCAAAAATGGGTGCAAGTTTACAATAGAGGAAGAGAGGATTGTGATAGAGTTGCAGGAACAATTTGGAAACAAATGGGCTAAGATTGCATCCTATTTACCAGGAAGAACAGACAATGATGTAAAAAATTTCTGGAGCAGTAGACAAAAAAGGTTGGCTAGGCTTCTCAAAACATCATCATCAACAACCTCAAAGTCACACAAAAACAAAGCCAAAGTTTCTTCCCATGTTCCATCTTACGAGGTTCCTTATAAGTTCAGTTCTTCATCAGAGGGAGAAACATCATCAAAGCCTCAATCATATTCATTACCATGCATTGAGAATTCTGATCAAGTTATTAAAATGGTTCCATTATTGGATCTTAAAAAATCCGAGCAACCTTGTTTCGACGAGAATTACGTTGAACAAGAGTTAACCCCTTTTGATCAGAGCTATAAAAGCACTGAATACATTGGATTTCCTCAGATTCCAGAACTCGATACTGATTTTACTTTTCCAATGGAAAGAGTTGATGAACACAATTTATTTGATGTGTTTGGTCCCTTGGAAACATCTGAGTTTGGAATGGTTCCTTTTTTTGAGCCATCAGAGAGTTGCAAAATTGATAGGTTCTTTGATGATTTTCCAGAGGACATGTTTGATAACATTGAGCCACCTTCAAATTTCTCTAAGCTCTGA 864 0.3773 MHGKKDQEHVRKGPWKTEEDEVLLHHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFTIEEERIVIELQEQFGNKWAKIASYLPGRTDNDVKNFWSSRQKRLARLLKTSSSTTSKSHKNKAKVSSHVPSYEVPYKFSSSSEGETSSKPQSYSLPCIENSDQVIKMVPLLDLKKSEQPCFDENYVEQELTPFDQSYKSTEYIGFPQIPELDTDFTFPMERVDEHNLFDVFGPLETSEFGMVPFFEPSESCKIDRFFDDFPEDMFDNIEPPSNFSKL* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0044 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 115 IPR017930 -
Mtr8g0044 287 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Mtr8g0044 287 MobiDBLite consensus disorder prediction 118 138 - -
Mtr8g0044 287 SMART sant 11 61 IPR001005 -
Mtr8g0044 287 SMART sant 65 113 IPR001005 -
Mtr8g0044 287 Gene3D - 67 139 - -
Mtr8g0044 287 Pfam Myb-like DNA-binding domain 12 57 IPR001005 -
Mtr8g0044 287 Pfam Myb-like DNA-binding domain 68 107 IPR001005 -
Mtr8g0044 287 CDD SANT 68 107 IPR001005 -
Mtr8g0044 287 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Mtr8g0044 287 CDD SANT 14 59 IPR001005 -
Mtr8g0044 287 PANTHER TRANSCRIPTION FACTOR DUO1 4 283 - -
Mtr8g0044 287 Gene3D - 4 65 - -
Mtr8g0044 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 63 IPR017930 -
Mtr8g0044 287 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0044 Mtr-Chr8 531777 533854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0044 1 280 MYB Transcription Factor Family AT3G60460 50.993 2.56e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr8g0044 Myb_DNA-binding 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0044 K09422 - gmx:100818656 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0044 8 531777 533854 Mtr8g0044 8 531777 533854 ECH