Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0029 ATGTTGGACTATGAATGGGGTAACCCATCAAACATCATGCTTACCGGAAATGAAGACAACTCCGGTGCAGCAGCCACCGATCAAGCCCACCGTCAAATCTTCGACCACTATGCTTCTCAAGCTATGTTATCCGACAACTACCTTAACGGACCTGGTGGTGGACCCACCATCGACATAAACAGTGGTGATTTTACTCATCACCACAACCAGTTTAGCCCACACAACCAGCAGCACCATAATATCCATCAGTCCTTCTTCGACCCACGGGCTTTTCATGGAGGGTCATCAACTGCTTCTTCTTACCCTCCACCTCAACCACAACCTCCTCCTTCCATGCTCTCCCTTGACCCTCTTCCTGGTCATGGACATAGCCCTGGATTCCTCCTCGTACCAAAATCCGAGGATGTTAACAGACCCATTGACTTCGTGGGCTCTAGACTTGGACTCAACCTTGGTGGCCGCACTTACTTCTCTTCCGAAGATGACTTCGTGACCCGCCTTTACCGTCGGTCTAGACCACCTGAACCGGGTTCCACAGGTTCTTCGAACTCACCTAGGTGTCAAGCCGAAGGTTGCAATGCTGATCTATCTCAGGCTAAGCATTACCACCGCCGCCACAAAGTTTGTGAGTTTCACTCGAAGGCAGCCACCGTCGTTGCAGCTGGGTTGACTCAGCGGTTCTGCCAGCAATGCAGCAGGTTCCATCTTCTATCTGAGTTTGATAATGGAAAACGTAGCTGCAGGAAGAGATTGGCTGATCATAATCGTCGTAGGAGAAAAACTCAGCACCCTAATACTCAAGATATTCACAAATCTCACAATACTTTGGATAGTTCTGCCACAAGATCCCCTCCGGAGTCTGGAACTCAATCCACATCTTCTGTGACTGTGGCCGTATCTCCACCGGATTATTTTCGACAAAGGTCGTACCAAACCCCAAGCCCTTCAACAACTTCAAGCTCAATGTTTTTCTCCACCGGGTAG 984 0.4949 MLDYEWGNPSNIMLTGNEDNSGAAATDQAHRQIFDHYASQAMLSDNYLNGPGGGPTIDINSGDFTHHHNQFSPHNQQHHNIHQSFFDPRAFHGGSSTASSYPPPQPQPPPSMLSLDPLPGHGHSPGFLLVPKSEDVNRPIDFVGSRLGLNLGGRTYFSSEDDFVTRLYRRSRPPEPGSTGSSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVVAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQHPNTQDIHKSHNTLDSSATRSPPESGTQSTSSVTVAVSPPDYFRQRSYQTPSPSTTSSSMFFSTG* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0029 327 MobiDBLite consensus disorder prediction 101 115 - -
Mtr8g0029 327 MobiDBLite consensus disorder prediction 250 327 - -
Mtr8g0029 327 Pfam SBP domain 187 260 IPR004333 GO:0003677
Mtr8g0029 327 ProSiteProfiles Zinc finger SBP-type profile. 184 261 IPR004333 GO:0003677
Mtr8g0029 327 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 100 311 - -
Mtr8g0029 327 SUPERFAMILY SBT domain 185 264 IPR036893 GO:0003677|GO:0005634
Mtr8g0029 327 MobiDBLite consensus disorder prediction 86 130 - -
Mtr8g0029 327 MobiDBLite consensus disorder prediction 250 264 - -
Mtr8g0029 327 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 100 311 IPR044817 GO:0003677
Mtr8g0029 327 Gene3D - 177 248 IPR036893 GO:0003677|GO:0005634
Mtr8g0029 327 MobiDBLite consensus disorder prediction 268 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0029 Mtr-Chr8 378996 381404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0029 1 234 SBP-box Gene Family AT1G02065 45.492 2.77e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mtr8g0029 SBP 4.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0029 - - gmx:100778566 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0029 8 378996 381404 Mtr8g0029 8 378996 381404 ECH